View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_29 (Length: 321)
Name: NF16535_low_29
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 48 - 265
Target Start/End: Complemental strand, 12344650 - 12344433
Alignment:
| Q |
48 |
tgtggaagttgaagatagcagaaggtggagaaaggttgatttcaaggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactca |
147 |
Q |
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| T |
12344650 |
tgtggaagttgaagatagcagaaggtggagaaaggttgatttcagggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactca |
12344551 |
T |
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| Q |
148 |
acaagaacgtgatgagatagaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggtactt |
247 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344550 |
acaagaacgtgatgagattgaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggtactt |
12344451 |
T |
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| Q |
248 |
ctatatttatcatctttt |
265 |
Q |
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|||||||||||||||||| |
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| T |
12344450 |
ctatatttatcatctttt |
12344433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 48 - 244
Target Start/End: Complemental strand, 12308915 - 12308719
Alignment:
| Q |
48 |
tgtggaagttgaagatagcagaaggtggagaaaggttgatttcaaggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactca |
147 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12308915 |
tgtggaagttgaagataggagaaggtggagaaaggttgatttccttaaacaatttcataggacgtcaacattgggaattcgatccaaatgctggaactca |
12308816 |
T |
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| Q |
148 |
acaagaacgtgatgagatagaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggta |
244 |
Q |
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| T |
12308815 |
acaagaacgtgatgagatagaaaggctacgacatgaattcaccaaaaatcgattttccaacaaacaaagtgctgatctcttcatgagaatgcaggta |
12308719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 244
Target Start/End: Complemental strand, 35189211 - 35189015
Alignment:
| Q |
48 |
tgtggaagttgaagatagcagaaggtggagaaaggttgatttcaaggaacaatttcattggacgtcaacactgggaattcgatccaaatgctggaactca |
147 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||||| ||| || || || |||||||||||||||||||| ||||||||||| ||||| | |
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| T |
35189211 |
tgtggaagttgaagatagcagaaggaggagaagggttgatttctgtgaataactttataggacgtcaacactgggaatttgatccaaatgcaggaacacc |
35189112 |
T |
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| Q |
148 |
acaagaacgtgatgagatagaaaggttgcgctatgaattcaccaaaaaccgattttccaccaaagttagttctgacctctttatgagaatgcaggta |
244 |
Q |
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| |||||| || |||||| |||||| | ||| | |||||||||||||| |||| |||| |||| |||||||||||||| ||||||||||||||| |
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| T |
35189111 |
agaagaacatgctgagattgaaaggctacgcattcaattcaccaaaaacagattctccatcaaacaaagttctgacctcttcatgagaatgcaggta |
35189015 |
T |
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