View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_30 (Length: 315)
Name: NF16535_low_30
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 32628532 - 32628830
Alignment:
| Q |
11 |
catcatcaatgcccctgcaaatgttactaatgtcccaatcacttttgctatgcttcgtatttccttcatatttacacgttcaatcctgatacattcatta |
110 |
Q |
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| T |
32628532 |
catcatcaatgcccctgcaaatgttactaatgtcccaatcacttttgctatgcttcgtatttccttcatatttacacgttcaatcctgatacattcatta |
32628631 |
T |
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| Q |
111 |
tttattacacaagttaatggtatattagcatttcccaaatgttatagcatt-------------cttaggacgcatgttagcatttacctgaaaattacg |
197 |
Q |
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| T |
32628632 |
tttattagacaagttaatggtatattagcatttcccaaatgttatagcattagtggaacctttacttaggacgcatgttagcatttacctgaaaattacg |
32628731 |
T |
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| Q |
198 |
gctagcacaaaggtaacagaaggaacagcattcatcaaagcagaagcaaatgaagccgatgtatattgcatccccaagaaagtaaatccttgatctatc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628732 |
gctagcacaaaggtaacagaaggaacagcattcatcaaagcagaagcaaatgaagccgatgtatattgcatccccaagaaagtaaatccttgatctatc |
32628830 |
T |
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