View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16535_low_31 (Length: 310)

Name: NF16535_low_31
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16535_low_31
NF16535_low_31
[»] chr1 (1 HSPs)
chr1 (11-294)||(4157135-4157419)
[»] scaffold0989 (1 HSPs)
scaffold0989 (15-293)||(749-1027)
[»] chr3 (1 HSPs)
chr3 (15-103)||(12074486-12074575)
[»] chr7 (2 HSPs)
chr7 (16-135)||(18008666-18008786)
chr7 (173-201)||(11577246-11577274)
[»] chr8 (2 HSPs)
chr8 (17-97)||(3507456-3507537)
chr8 (173-247)||(7029880-7029953)
[»] chr2 (1 HSPs)
chr2 (55-134)||(2655244-2655323)
[»] chr4 (1 HSPs)
chr4 (85-123)||(11894344-11894382)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 4157419 - 4157135
Alignment:
Q  11 atgaagcggcatccttctaagttccatttctcaagggagtacttatgataatggatgtatcaaaatggaggttcttcttagagcacatgatgtttgggag 110  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  4157419 atgaagcggcatccttctaagttccacttctcaagggagtacttatgataatagatgtatcaaaatggaggttcttcttagagcacatgatgttttggag 4157320  T
Q  111 gttcttgaaaaaggttataaggaatattgtcatgaggattccttaactcaagc-aagattgacattttgaaggattcaagaaagagagacaaacaaaatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4157319 gttcttgaaaaaggttataaggaatattgtcatgaggattccttaactcaagcaaagattgacattttgaaggattcaagaaagagagacaaacaaaatc 4157220  T
Q  210 ctcttccttatctaccaagcattgaatgaagacgagttcgaataaattttaaatgcaatatccgctaaaggaggcatggtagaac 294  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  4157219 ctcttccttatctaccaagcattgaatgaagacgagctcgagtaatttttaaatgcaatatccgttaaaggaggcatggtagaac 4157135  T

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Target: scaffold0989 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 1027 - 749
Alignment:
Q  15 agcggcatccttctaagttccatttctcaa-gggagtacttatgataatggatgtatcaaaatggaggttcttcttagagcacatgatgtttgggaggtt 113  Q
    ||||||||||||| |||||||| ||||||| |||||||| ||||||||| | |  |||||||||  || ||||||| |||||||||||||||||||||||    
T  1027 agcggcatccttccaagttccacttctcaaagggagtacctatgataattgcttcatcaaaatgatggctcttcttggagcacatgatgtttgggaggtt 928  T
Q  114 cttgaaaaaggttataaggaatattgtcatgaggattccttaactcaagca-agattgacattttgaaggattcaagaaagagagacaaacaaaatcctc 212  Q
     |||||||||| ||||||||||      ||||||||||||||||| ||||| | |  |||| |||||||||||||||||||||||||||| ||    |||    
T  927 gttgaaaaaggctataaggaatcacaagatgaggattccttaactaaagcacaaagagacactttgaaggattcaagaaagagagacaaa-aaggctctc 829  T
Q  213 ttccttatctaccaagcattgaatgaagacgagttcgaataaattttaaatgcaatatccgctaaaggaggcatggtagaa 293  Q
    ||||| ||||||||||||||| ||||||| ||||||||  |||||| |||||||| ||||||| |||||||||||| ||||    
T  828 ttcctcatctaccaagcattggatgaagatgagttcgagaaaatttcaaatgcaacatccgct-aaggaggcatgggagaa 749  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 12074486 - 12074575
Alignment:
Q  15 agcggcatccttctaagttccatttctcaa-gggagtacttatgataatggatgtatcaaaatggaggttcttcttagagcacatgatgt 103  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||| | || |||||||||  || ||||||| |||||||||||||    
T  12074486 agcggcatccttctaagttccacttctcaaagggagtacctatgataattggtgcatcaaaatgatggctcttcttggagcacatgatgt 12074575  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 18008786 - 18008666
Alignment:
Q  16 gcggcatccttctaagttccatttctcaaggg-agtacttatgataatggatgtatcaaaatggaggttcttcttagagcacatgatgtttgggaggttc 114  Q
    ||||||||| |||||||| || |||| ||||| ||||||||||||||| | || ||||||||  ||| ||| | | ||||| |||||||||  ||||||     
T  18008786 gcggcatccgtctaagttacacttcttaaggggagtacttatgataattggtgcatcaaaataaaggctctccatggagcagatgatgttttagaggttg 18008687  T
Q  115 ttgaaaaaggttataaggaat 135  Q
    || ||||||| ||||||||||    
T  18008686 ttcaaaaaggctataaggaat 18008666  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 11577246 - 11577274
Alignment:
Q  173 attttgaaggattcaagaaagagagacaa 201  Q
    |||||||||||||||||||||||||||||    
T  11577246 attttgaaggattcaagaaagagagacaa 11577274  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 3507456 - 3507537
Alignment:
Q  17 cggcatccttctaagttccatttctca-agggagtacttatgataatggatgtatcaaaatggaggttcttcttagagcaca 97  Q
    ||||||||||| |||||| | |||||| ||||||||| ||||||||| | || || |||||| ||| |||||||||||||||    
T  3507456 cggcatccttccaagttcaacttctcacagggagtacctatgataattggtgcattaaaatgaaggctcttcttagagcaca 3507537  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 7029880 - 7029953
Alignment:
Q  173 attttgaaggattcaagaaagagagacaaacaaaatcctcttccttatctaccaagcattgaatgaagacgagtt 247  Q
    ||||||||||||||||||||||||| |||  ||  ||| ||||||  |||||||||||||| ||||||| |||||    
T  7029880 attttgaaggattcaagaaagagaggcaagaaagctcc-cttcctcttctaccaagcattgtatgaagatgagtt 7029953  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 2655244 - 2655323
Alignment:
Q  55 atgataatggatgtatcaaaatggaggttcttcttagagcacatgatgtttgggaggttcttgaaaaaggttataaggaa 134  Q
    |||||||| |||||||||||||| ||| |||||| | |||||| ||||||| ||| ||| || | ||||| |||||||||    
T  2655244 atgataattgatgtatcaaaatgaaggctcttctgaaagcacaggatgtttaggacgttgtttagaaaggctataaggaa 2655323  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 11894382 - 11894344
Alignment:
Q  85 ttcttagagcacatgatgtttgggaggttcttgaaaaag 123  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  11894382 ttcttagagcacatgatgtttgggaggttgttcaaaaag 11894344  T

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