View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16535_low_33 (Length: 279)

Name: NF16535_low_33
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16535_low_33
NF16535_low_33
[»] chr5 (6 HSPs)
chr5 (11-264)||(7141536-7141789)
chr5 (25-264)||(7154306-7154545)
chr5 (79-226)||(7131850-7131997)
chr5 (22-167)||(41305312-41305457)
chr5 (25-86)||(31177694-31177755)
chr5 (73-161)||(41337787-41337875)
[»] chr3 (1 HSPs)
chr3 (25-167)||(22986265-22986407)
[»] chr6 (2 HSPs)
chr6 (90-169)||(12425274-12425353)
chr6 (92-169)||(12268332-12268409)
[»] chr8 (1 HSPs)
chr8 (25-170)||(23610205-23610350)
[»] chr4 (1 HSPs)
chr4 (90-169)||(55954947-55955026)
[»] chr2 (1 HSPs)
chr2 (124-169)||(41795747-41795792)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 7141789 - 7141536
Alignment:
Q  11 caaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141789 caaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctgg 7141690  T
Q  111 aataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtatatcatacccatctatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141689 aataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacccatctatt 7141590  T
Q  211 ttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141589 ttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaac 7141536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 7154545 - 7154306
Alignment:
Q  25 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 124  Q
    ||||||||||| |||||||| || |||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  7154545 ggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcag 7154446  T
Q  125 catcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgt 224  Q
    ||||| |||||||||  ||||||||| | | ||||||||||||||| |  ||| |||||||||||||||| ||||| ||||||||  |||| | ||| ||    
T  7154445 catcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagt 7154346  T
Q  225 gctcaatcttggaaccaacaaaggagaaggtgggtgtaac 264  Q
    ||    ||| || ||||| ||||| |||||||||||||||    
T  7154345 gcattctctagggaccaataaaggtgaaggtgggtgtaac 7154306  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 7131997 - 7131850
Alignment:
Q  79 aaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactg 178  Q
    ||||||||  ||||| | ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| ||| | || |||||| |||| || | ||||     
T  7131997 aaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactt 7131898  T
Q  179 tagtattttttggtatatcatacccatctattttggttagttctgtgc 226  Q
    |||| ||||||||||||||||| ||||| || ||||||| ||| ||||    
T  7131897 tagtcttttttggtatatcataaccatcaatgttggttaattcagtgc 7131850  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 41305457 - 41305312
Alignment:
Q  22 cccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctct 121  Q
    ||||||||||| ||||||||||| || || || ||||| || ||||   | ||||||||||||||  | |||| | |||||||||| ||  |||| ||||    
T  41305457 cccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactct 41305358  T
Q  122 cagcatcattccaatatttaggatctcttcctattgcccatgcatt 167  Q
    |||| |||  |||||| || ||||||||||| || ||||| |||||    
T  41305357 cagcttcaacccaatactttggatctcttccaatcgcccaagcatt 41305312  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 31177694 - 31177755
Alignment:
Q  25 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat 86  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||  | ||||||||||||||    
T  31177694 ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaat 31177755  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 41337875 - 41337787
Alignment:
Q  73 cctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgccca 161  Q
    ||||||||||||||  | |||| | |||||||||| ||  |||| |||||||| |||  |||||| || ||||||||||| ||||||||    
T  41337875 cctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcagcttcaacccaatactttggatctcttccaattgccca 41337787  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 22986265 - 22986407
Alignment:
Q  25 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 124  Q
    ||||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||||  ||||||||  ||||||||| |||  |||| | || |    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcgg 22986364  T
Q  125 catcattccaatatttaggatctcttcctattgcccatgcatt 167  Q
      |||||||||||||||||||| | ||| || ||||| |||||    
T  22986365 ggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 12425274 - 12425353
Alignment:
Q  90 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 169  Q
    |||||||| ||||||||| || |||||| |||||||||||  ||||| ||  ||||||||||| ||||||||||||||||    
T  12425274 actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta 12425353  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 12268409 - 12268332
Alignment:
Q  92 tatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 169  Q
    |||||| ||||||||| || |||||| |||| ||||||  |||||  || ||||||||||| ||||||||||||||||    
T  12268409 tatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattta 12268332  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 23610205 - 23610350
Alignment:
Q  25 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 124  Q
    ||||| |||||||| ||||| || || |||||| |||| || ||| |||||  |||||||||  | ||||||  |||||| || |||  |||| | || |    
T  23610205 ggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaacctttcaggataaaacttatctg 23610304  T
Q  125 catcattccaatatttaggatctcttcctattgcccatgcatttat 170  Q
      |||||||||||||||||||| |||||||||||||| ||||||||    
T  23610305 ggtcattccaatatttaggatcccttcctattgcccaagcatttat 23610350  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 55954947 - 55955026
Alignment:
Q  90 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 169  Q
    |||||||| |||||| || || |||||| |||  ||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  55954947 actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta 55955026  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 41795747 - 41795792
Alignment:
Q  124 gcatcattccaatatttaggatctcttcctattgcccatgcattta 169  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  41795747 gcatcatatcaatatttgggatctcttccgattgcccatgcattta 41795792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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