View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16535_low_36 (Length: 268)

Name: NF16535_low_36
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16535_low_36
NF16535_low_36
[»] chr5 (2 HSPs)
chr5 (1-230)||(9082349-9082577)
chr5 (1-112)||(4032184-4032294)
[»] chr4 (1 HSPs)
chr4 (9-195)||(621248-621433)
[»] chr3 (1 HSPs)
chr3 (9-195)||(1576723-1576908)
[»] chr2 (1 HSPs)
chr2 (55-230)||(23833612-23833783)
[»] chr7 (2 HSPs)
chr7 (89-219)||(44419317-44419446)
chr7 (1-59)||(44419956-44420014)
[»] scaffold0026 (1 HSPs)
scaffold0026 (89-198)||(104649-104758)
[»] chr1 (1 HSPs)
chr1 (133-201)||(45905134-45905202)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9082577 - 9082349
Alignment:
Q  1 gaatcccatttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnn-acaaacccaat 99  Q
    |||||| ||||||||||| ||||||||||||||  |||||||||| || |||| ||||||||||||| ||| |||||||||        |||||||||||    
T  9082577 gaatcctatttttgaaatgggttggattcagaatcttgaacatatgaatgttccttctgttcaaaaa-ccctacattccaattttttttacaaacccaat 9082479  T
Q  100 cttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgttcatc 199  Q
    ||||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9082478 cttcatcattcaaccttaatttttctttatcaaaagttatatgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgttcatt 9082379  T
Q  200 tgcaacctgtgttttggtcgttgatggaagg 230  Q
    |||||||||| ||||||||| || |||||||    
T  9082378 tgcaacctgt-ttttggtcgctggtggaagg 9082349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 4032294 - 4032184
Alignment:
Q  1 gaatcccatttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnnacaaacccaatc 100  Q
    |||||| ||||||||||  ||||||||||||||| ||||||||||||| | || ||||||||| |||||||||||||||||       ||||||||||||    
T  4032294 gaatcctatttttgaaacgggttggattcagaagcttgaacatatcaatgctccttctgttca-aaaaccccacattccaattattttacaaacccaatc 4032196  T
Q  101 ttcatcattcaa 112  Q
    ||||||||||||    
T  4032195 ttcatcattcaa 4032184  T

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Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 621248 - 621433
Alignment:
Q  9 tttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnnacaaacccaatcttcatcat 108  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||       ||||||||||||||||||||    
T  621248 tttttgaaatgggttggattgagaagtttgaacatatcaatgttccttctgttcaaaaa-ccccacattccaatttttttacaaacccaatcttcatcat 621346  T
Q  109 tcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgtt 195  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  621347 tcaaccttcatttttctttgtcaaaagttatctgagcaccccaatgttgtagatttcaaggttgtttgtgaagaggatgattttgtt 621433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 1576908 - 1576723
Alignment:
Q  9 tttttgaaataggttggattcagaagtttgaacatatcaaagttctttctgttcaaaaaaccccacattccaannnnnnnacaaacccaatcttcatcat 108  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||       ||||||||||||||||||||    
T  1576908 tttttgaaatgggttggattgagaagtttgaacatatcaatgttccttctgttcaaaaa-ccccacattccaatttttttacaaacccaatcttcatcat 1576810  T
Q  109 tcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgtt 195  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1576809 tcaaccttcatttttctttgtcaaaagttatctgagcaccccaatgttgtagatttcaaggttgtttgtgaagaggatgattttgtt 1576723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 23833612 - 23833783
Alignment:
Q  55 ttctgttcaaaaaaccccacattccaannnnnnnacaaacccaatcttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatg 154  Q
    ||||||||||||| |||||||||||||       |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  23833612 ttctgttcaaaaa-ccccacattccaatttttttacaaacccaatcttcatcattcaaccttcatttttctttgtcaaaagttatctgagcaccccaatg 23833710  T
Q  155 ttgtagatttcaaggctgtttgtgaagaggacgattttgttcatctgcaacctgtgttttggtcgttgatggaagg 230  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||| || |||||||    
T  23833711 ttgtagatttcaaggctgtt--tgaagaggacgattctgttcatctgcaacctgt-ttttggtcgctggtggaagg 23833783  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 44419446 - 44419317
Alignment:
Q  89 acaaacccaatcttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacga 188  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||||| |||||| |||||||||||| |||||||||||| ||||||||| ||    
T  44419446 acaaacccaatcttcatcattcaaccttcatttttctttgtcaatagttatctgggcacccaaatgttgtagatctcaaggctgtttatgaagaggaaga 44419347  T
Q  189 ttttgttcatctgcaacctgtgttttggtcg 219  Q
    |||||||||||||  |||||| |||||||||    
T  44419346 ttttgttcatctgacacctgt-ttttggtcg 44419317  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44420014 - 44419956
Alignment:
Q  1 gaatcccatttttgaaataggttggattcagaagtttgaacatatcaaagttctttctg 59  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  44420014 gaatcctatttttgaaatgggttggattcagaagcttgaacatatcaatgttccttctg 44419956  T

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Target: scaffold0026 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 104758 - 104649
Alignment:
Q  89 acaaacccaatcttcatcattcaacctttatttttctttgttaaaagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacga 188  Q
    |||||||||||||||||||||||||||| | |||||||| | || ||||||||| |||||| ||| |||||||| |||||| ||||| ||||||||| ||    
T  104758 acaaacccaatcttcatcattcaaccttcaattttctttatcaagagttatctgggcacccaaatattgtagatctcaaggttgtttatgaagaggaaga 104659  T
Q  189 ttttgttcat 198  Q
    ||||||||||    
T  104658 ttttgttcat 104649  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 45905202 - 45905134
Alignment:
Q  133 aagttatctgagcaccccaatgttgtagatttcaaggctgtttgtgaagaggacgattttgttcatctg 201  Q
    |||||||||| |||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  45905202 aagttatctgggcacccaaatgttgtagatctcaaggctgtttatgaagaggaagattttgttcatctg 45905134  T

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