View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16535_low_37 (Length: 265)
Name: NF16535_low_37
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 39984806 - 39984552
Alignment:
| Q |
1 |
aaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
39984806 |
aaaactatgcatacaacatgaggaacaccattaaggatgaaaaaattgcaggaaagcttgattcggatgacaaaaagaagatcgaggacaccattgaggc |
39984707 |
T |
|
| Q |
101 |
tgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaag |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
39984706 |
tgctatccagtggctagatgccaaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaag |
39984607 |
T |
|
| Q |
201 |
atgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
39984606 |
atgtaccaaggtggtgcaggtcctgacatgggtgctgctcccggtgatgatgatg |
39984552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 8018432 - 8018634
Alignment:
| Q |
12 |
tacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagt |
111 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||| ||||||| | || ||||| ||||||||||| || | ||||| ||||| || |||| |
|
|
| T |
8018432 |
tacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgatgatgcaattgacgctgcaattcagt |
8018531 |
T |
|
| Q |
112 |
ggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaagg |
211 |
Q |
| |
|
|| | || ||||||| | |||||||| ||||||||||| || |||||||||||| | || || | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
8018532 |
ggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaagg |
8018631 |
T |
|
| Q |
212 |
tgg |
214 |
Q |
| |
|
||| |
|
|
| T |
8018632 |
tgg |
8018634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 8101759 - 8101614
Alignment:
| Q |
69 |
gacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaat |
168 |
Q |
| |
|
||||||||| |||||||||| | ||||||| || || || ||||| ||||| ||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
8101759 |
gacaagaagcagattgaggatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagc |
8101660 |
T |
|
| Q |
169 |
tggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
214 |
Q |
| |
|
| || | |||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
8101659 |
ttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtgg |
8101614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 17706694 - 17706911
Alignment:
| Q |
11 |
atacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccag |
110 |
Q |
| |
|
|||||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | |||||||| | |||||||||||||||||||| |||||| | |
|
|
| T |
17706694 |
atacaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagacaagaaaa---ttgaggacaccattgaggctactatccgg |
17706790 |
T |
|
| Q |
111 |
tggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaag |
210 |
Q |
| |
|
|||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17706791 |
tggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaag |
17706890 |
T |
|
| Q |
211 |
gtggtgcaggtcctgacatgg |
231 |
Q |
| |
|
||||||| |||| || ||||| |
|
|
| T |
17706891 |
gtggtgctggtcttggcatgg |
17706911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 17649328 - 17649568
Alignment:
| Q |
11 |
atacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccag |
110 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17649328 |
atacaacatgaggaacaccattaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga---ttgaggacaccattgaggctgctatccag |
17649424 |
T |
|
| Q |
111 |
tggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaag |
210 |
Q |
| |
|
|||||||| | |||||||||| | ||||||||||||||||||| |||||||||||| | | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17649425 |
tggctagaccc-aaccagcttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgtcggcaaccctatcattgccaagatgtaccaag |
17649523 |
T |
|
| Q |
211 |
gtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
255 |
Q |
| |
|
|||||||||||| |||||||| || || ||| ||||||||||| |
|
|
| T |
17649524 |
gtggtgcaggtcttgacatggatgccgctccaggtgatgatgatg |
17649568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 23597721 - 23597805
Alignment:
| Q |
129 |
cttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtg |
213 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||||||||| |||| || | ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
23597721 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 23588746 - 23588953
Alignment:
| Q |
6 |
tatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgcta |
105 |
Q |
| |
|
||||| |||||||||||||||||||| || || ||||||||||| ||| | | | ||||| |||||||| ||||| || | ||||||| |||| |
|
|
| T |
23588746 |
tatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaaaattgaagatgctattgagggggcta |
23588845 |
T |
|
| Q |
106 |
tccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgta |
205 |
Q |
| |
|
| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| | | ||||||||||||||||| | |||||| |
|
|
| T |
23588846 |
ttcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgta |
23588945 |
T |
|
| Q |
206 |
ccaaggtg |
213 |
Q |
| |
|
||||||| |
|
|
| T |
23588946 |
tcaaggtg |
23588953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University