View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_44 (Length: 244)
Name: NF16535_low_44
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 29982013 - 29981855
Alignment:
| Q |
17 |
agtttataccaatcaaatgtttttatttatttattatgattcttttaccaactttagtgctttttgtggctagctatacgataatatgttttggaaaaga |
116 |
Q |
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| T |
29982013 |
agtttataccaatcaaatgtttttatttatttattatgattcttttaccaactttagtgctttttgtggctagctatacgataatatgttttggaaaaga |
29981914 |
T |
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| Q |
117 |
agagatgatattcaactatatgattaataaaaacagattgataatgaccaccatcttac |
175 |
Q |
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| T |
29981913 |
agagatgatattcaactatatgattaataaaaacagattgataatgaccaccatcttac |
29981855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 29980640 - 29980529
Alignment:
| Q |
23 |
taccaatcaaatgttttt-atttatttattatgattcttttaccaactttagtgctttttgtggctagctatacgataatatgttttggaaaagaagaga |
121 |
Q |
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| T |
29980640 |
taccaatcaaatgttttttattcatctatgataattcttttaccaactttaatgccttttgtggctagctatacgatactaggttttcgagaa-aaaagg |
29980542 |
T |
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| Q |
122 |
tgatattcaacta |
134 |
Q |
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| T |
29980541 |
tgatattcaacta |
29980529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 29981870 - 29981830
Alignment:
| Q |
197 |
atgaccaccatcttacatacatgcatatgcatcttcatttc |
237 |
Q |
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| T |
29981870 |
atgaccaccatcttacatacatgcatatgcatcttcttttc |
29981830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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