View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_49 (Length: 226)
Name: NF16535_low_49
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 36536217 - 36536136
Alignment:
| Q |
127 |
taacactaacatatgtactagacatgttttcaatctgaagcgtcatgattcatagatgatacataactctaacgattagact |
208 |
Q |
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| T |
36536217 |
taacactaacatatgtactagacacgttttcaatctgaagcgtcatgattcatagatgatacataactctaacgattagact |
36536136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 36536281 - 36536214
Alignment:
| Q |
14 |
cacagatatcgacactaaacaagacactaacacaataatttaagaaaattaaagcgattgaatgtaac |
81 |
Q |
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| T |
36536281 |
cacaaatatcgacactaaacaagacactaacacaataatttaagaaaattaaagcgattgaatgtaac |
36536214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 10440382 - 10440425
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgt |
90 |
Q |
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| T |
10440382 |
aataatttaagaaaataaaagtgattgaatgttactacatgtgt |
10440425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 3943759 - 3943800
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatgt |
88 |
Q |
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| T |
3943759 |
aataatttaagaaaataaaagtgattgaatgtaaccacatgt |
3943800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 13912088 - 13912128
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatg |
87 |
Q |
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| T |
13912088 |
aatagtttaagaaaattaaagctattaaatgtaactacatg |
13912128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 1678683 - 1678730
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggt |
94 |
Q |
| |
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|||||||| ||||||| |||| |||| ||||||||||||||||||||| |
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| T |
1678683 |
aataatttgagaaaatgaaagtgattaaatgtaactacatgtgttggt |
1678730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 21606644 - 21606597
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggt |
94 |
Q |
| |
|
|||||||||||||||| |||| |||| | ||||||||||||||||||| |
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|
| T |
21606644 |
aataatttaagaaaataaaagtgattaagtgtaactacatgtgttggt |
21606597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 27131723 - 27131675
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggtg |
95 |
Q |
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|
|||||||||||||||| ||| |||||||||||| ||||||||||||| |
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| T |
27131723 |
aataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtg |
27131675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 39941300 - 39941341
Alignment:
| Q |
49 |
taatttaagaaaattaaagcgattgaatgtaactacatgtgt |
90 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||| |
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| T |
39941300 |
taatttaagaaaatgtaagcgattgaatgtaaccacatgtgt |
39941341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 18315642 - 18315594
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggtg |
95 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||| |||||| |||||| |
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| T |
18315642 |
aataatttaagaaaataaaagcgattaaatgaaaccacatgtattggtg |
18315594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 2468523 - 2468475
Alignment:
| Q |
47 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggtg |
95 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||| |
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| T |
2468523 |
aataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtg |
2468475 |
T |
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