View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_5 (Length: 542)
Name: NF16535_low_5
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 277 - 528
Target Start/End: Original strand, 5463373 - 5463624
Alignment:
| Q |
277 |
ctttgaccaatgtcacaatgtgttgtgtggcttttgtgattattatttctaatcatgatccattgcagaacttggtgaagaaataatgcaaataagcaaa |
376 |
Q |
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| T |
5463373 |
ctttgaccattgtcacaatgtgttgtgtggcttttgtgattattgtttctgatcttgatccattgcaaaacttggtgaagaaataatgtaaataagcaaa |
5463472 |
T |
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| Q |
377 |
aggggttggtaatcccattttccattccaaagtactcaaaatcaaaagttccatattcttgataactttgttctcaaatcgatattctattggatattct |
476 |
Q |
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| T |
5463473 |
aggggttggtaatcccattttccattccaaagtactcaaaatcaaaagttccatgttcttgataactttgttctcaaatcgatattctattggatattct |
5463572 |
T |
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| Q |
477 |
gatagtagaggaacactttgttcttccatttttgctgcaattgataaacatg |
528 |
Q |
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| T |
5463573 |
gacagtggaggaacactttgttcttccatttttgctgcaattgataaacatg |
5463624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 46 - 279
Target Start/End: Complemental strand, 11829002 - 11828761
Alignment:
| Q |
46 |
acttatgagtttcccct-agtatcacattgtgttccctgtcattaagcttgtcacaccctacctaaattataacaac-----aaataaccgtggaactct |
139 |
Q |
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| T |
11829002 |
acttatgagtttccccttagtatcacattgtgttccctgtcattaagcttgtcacaccctacctatattataacaacacataacataaccgtggaactct |
11828903 |
T |
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| Q |
140 |
cctattagaatcaacttgtgtctctctttaatgaacaaacgagaatgaatagaagtccaattctcttaaaaggatcatcaatcctatataattgtctttc |
239 |
Q |
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| T |
11828902 |
cctgttagaatcaacttgtgtctctctttaatgaacaaacgagaatgaatagaagtccaattctcttaaaaggatcatcaatcctatataattgtctttc |
11828803 |
T |
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| Q |
240 |
ttccctcgatagaggctcttgtaaac--agagttaaaagctt |
279 |
Q |
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| T |
11828802 |
ttccctcgatagaggctcttgtaaacatagagttaaaagctt |
11828761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 11829806 - 11829774
Alignment:
| Q |
18 |
gtgacaaccaatttttatctttaatgagactta |
50 |
Q |
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| T |
11829806 |
gtgacaaccaagttttatctttaatgagactta |
11829774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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