View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16535_low_6 (Length: 526)

Name: NF16535_low_6
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16535_low_6
NF16535_low_6
[»] chr6 (5 HSPs)
chr6 (159-348)||(9869683-9869871)
chr6 (10-341)||(21842733-21843065)
chr6 (458-520)||(9869990-9870052)
chr6 (458-520)||(21844435-21844497)
chr6 (232-269)||(21034188-21034225)
[»] chr8 (8 HSPs)
chr8 (10-341)||(24720597-24720929)
chr8 (192-333)||(14998305-14998448)
chr8 (192-341)||(26828200-26828352)
chr8 (470-517)||(25231947-25231994)
chr8 (458-517)||(26828481-26828540)
chr8 (460-517)||(24721058-24721115)
chr8 (189-341)||(25232132-25232286)
chr8 (130-264)||(21327903-21328038)
[»] chr7 (3 HSPs)
chr7 (10-341)||(19202934-19203266)
chr7 (231-348)||(1586974-1587092)
chr7 (458-517)||(13251488-13251547)
[»] scaffold0056 (1 HSPs)
scaffold0056 (10-225)||(23767-23982)
[»] chr5 (8 HSPs)
chr5 (189-341)||(19054586-19054739)
chr5 (192-341)||(24319005-24319155)
chr5 (179-348)||(16783198-16783370)
chr5 (192-341)||(25404883-25405032)
chr5 (458-517)||(16783497-16783556)
chr5 (470-517)||(19054400-19054447)
chr5 (458-520)||(24319283-24319345)
chr5 (461-507)||(25405163-25405209)
[»] chr3 (10 HSPs)
chr3 (233-341)||(34275012-34275120)
chr3 (458-520)||(8766942-8767004)
chr3 (458-520)||(8771825-8771887)
chr3 (194-339)||(12769709-12769854)
chr3 (458-517)||(34275233-34275292)
chr3 (192-337)||(16227512-16227658)
chr3 (475-517)||(13586887-13586929)
chr3 (475-520)||(19166056-19166101)
chr3 (475-518)||(12770002-12770045)
chr3 (296-341)||(19577844-19577889)
[»] chr2 (6 HSPs)
chr2 (192-341)||(28923007-28923157)
chr2 (458-517)||(25533512-25533571)
chr2 (470-520)||(28922821-28922871)
chr2 (262-341)||(16816206-16816285)
chr2 (262-341)||(16855363-16855442)
chr2 (458-517)||(25923942-25924001)
[»] chr4 (4 HSPs)
chr4 (244-341)||(12609382-12609479)
chr4 (461-520)||(13130611-13130670)
chr4 (458-513)||(12402805-12402860)
chr4 (475-520)||(12609208-12609253)
[»] scaffold0711 (1 HSPs)
scaffold0711 (232-341)||(6172-6281)
[»] chr1 (2 HSPs)
chr1 (270-341)||(18828843-18828914)
chr1 (477-517)||(18828655-18828695)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 159 - 348
Target Start/End: Original strand, 9869683 - 9869871
Alignment:
Q  159 gaaaaaccagctgctcaaaagtctgaatgcaacagttagacatatctgtcaggctcgggacgctaaatagcattgaataagaggcaacctatttcgtcaa 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  9869683 gaaaaaccagctgctcaaaagtctgaatgcaacagttagacatatccgtcaggctagggacgctaaatagtgttgaataagaggcaacctatttcgtcaa 9869782  T
Q  259 gataatgactcaaaagaagcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggagcaaccca 348  Q
    |||||||||| |||| ||||||| |||| ||| ||| | |||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  9869783 gataatgacttaaaataagcactgaatatgaggcaa-ccattgaccgtagagattcaaacgttaaacaagcgttgaattggagcaaccca 9869871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 21842733 - 21843065
Alignment:
Q  10 ataaggcttggtatgggcctttccaaataaattgcatctgcaagaacaatcttgttgagattaaggtccacaatagatggttcgccaaggtcctaattga 109  Q
    |||||||||||||||||| |||| |||||||  |||| ||||||||||||  ||||||||| |||| ||| | ||||||| | || ||||| | |||  |    
T  21842733 ataaggcttggtatgggcgtttcgaaataaaccgcatatgcaagaacaattgtgttgagatcaaggaccagactagatggatggcaaaggttccaatcaa 21842832  T
Q  110 ggaagtcatgcacctgcgagactatatgcaagaccaaggtagttggagagaaaaaccagctgctcaaaagtctgaatgcaacagttagacatatctgtca 209  Q
    |||||| ||||| |||||||||||||||  || || |||||| |||||| |||||  |||| |||||  | || ||    ||| ||||||||||| ||||    
T  21842833 ggaagtaatgcatctgcgagactatatgacaggcctaggtagctggagaaaaaaattagctactcaagggcctaaacaagacacttagacatatccgtca 21842932  T
Q  210 ggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggagacaatctattgaccgtag 308  Q
    |||||||||||||||| | ||  |||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| |||||||||||      
T  21842933 ggctcgggacgctaaacacgcgctgaataggaggcaacctattttgtcaagctaatgactcaaaagaagcactgaataggaggcaacctattgaccgtct 21843032  T
Q  309 agattcagacgttaaacaagcgctgaatgggag 341  Q
    ||| ||||||||||||||||||||||| |||||    
T  21843033 agactcagacgttaaacaagcgctgaaagggag 21843065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 9869990 - 9870052
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  9869990 gcattacatgttcaacttttccttttatgcttaaatttgttttagtcttagatattcatttca 9870052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 21844435 - 21844497
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    ||||||||| | |||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  21844435 gcattacatttacaacctttccttttatgcttaaatttgttttagtcttagttattcatttca 21844497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 21034225 - 21034188
Alignment:
Q  232 tgaataagaggcaacctatttcgtcaagataatgactc 269  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  21034225 tgaataagaggcaacctattttgtcaagctaatgactc 21034188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 24720597 - 24720929
Alignment:
Q  10 ataaggcttggtatgggcctttccaaataaattgcatctgcaagaacaatcttgttgagattaaggtccacaatagatggttcgccaaggtcctaattga 109  Q
    |||||||||||||||| |||||| |||||||  |||| ||||||||||||| ||||||||| |||| ||||| ||||||| | || ||||||| ||| ||    
T  24720597 ataaggcttggtatggacctttcgaaataaaccgcatatgcaagaacaatcgtgttgagatcaaggaccacactagatggatggcaaaggtcccaatcga 24720696  T
Q  110 ggaagtcatgcacctgcgagactatatgcaagaccaaggtagttggagagaaaaaccagctgctcaaaagtctgaatgcaacagttagacatatctgtca 209  Q
    ||||||||||||  ||||||||||||||  || || | |||||||||| |||||| ||||| |||||  |||||||    ||| ||||||||||  || |    
T  24720697 ggaagtcatgcatttgcgagactatatggcaggcctaagtagttggagggaaaaatcagctactcaagggtctgaacaagacacttagacatattcgtta 24720796  T
Q  210 ggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggagacaatctattgaccgtag 308  Q
    || ||||||||||||| | ||  |||||| |||||||| |||||||||||| ||||||||||||||||||  | |||||||| |||  |||||||||| |    
T  24720797 ggttcgggacgctaaacacgcgctgaataggaggcaacttatttcgtcaagctaatgactcaaaagaagcgttgaataggaggcaacttattgaccgtcg 24720896  T
Q  309 agattcagacgttaaacaagcgctgaatgggag 341  Q
     || |||||||||||||||||||| ||| ||||    
T  24720897 ggactcagacgttaaacaagcgcttaataggag 24720929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 14998448 - 14998305
Alignment:
Q  192 agttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaacctattt-cgtcaagataatgactcaaaagaagcactaaatagga 289  Q
    ||||||||||| | ||||||||||||| |||||| | || ||||||| |||||||||||||| ||||||| |||||||||||||||||   | |||||||    
T  14998448 agttagacataaccgtcaggctcgggatgctaaacacgcgttgaataggaggcaacctattttcgtcaagctaatgactcaaaagaagtgttgaatagga 14998349  T
Q  290 gacaatctattgaccgtagagattcagacgttaaacaagcgctg 333  Q
    ||||| ||||||||||| | || |||||||||||||||||||||    
T  14998348 gacaacctattgaccgtcgggaatcagacgttaaacaagcgctg 14998305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 26828200 - 26828352
Alignment:
Q  192 agttagaca-tatctgtcaggctcgggacgctaaatag-cattgaataagaggcaacctatt-tcgtcaagataatgactcaaaagaagcactaaatagg 288  Q
    ||||||||| ||| ||||||||||||||||||||| |  | ||||||| ||| ||||||||| |||||||| ||||| ||||||||||||  ||||||||    
T  26828200 agttagacaatatatgtcaggctcgggacgctaaacacacgttgaataggagacaacctattatcgtcaagctaatggctcaaaagaagcgttaaatagg 26828299  T
Q  289 agacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    || ||| |||||||||||   || ||| |||||||||||||| ||||||||||    
T  26828300 aggcaacctattgaccgtcaggactcatacgttaaacaagcgttgaatgggag 26828352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 517
Target Start/End: Complemental strand, 25231994 - 25231947
Alignment:
Q  470 caacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25231994 caacatttccttttatgcttaaatttgttttagtcttaggtattcatt 25231947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 26828481 - 26828540
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    ||||||||| | |||| ||||||||||||||||||||| || ||| ||||||||||||||    
T  26828481 gcattacatttacaacctttccttttatgcttaaatttattttagccttaggtattcatt 26828540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 517
Target Start/End: Original strand, 24721058 - 24721115
Alignment:
Q  460 attacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    ||||||| | |||| || |||||||||||||||||| || ||||||||||||||||||    
T  24721058 attacatttacaaccttcccttttatgcttaaatttattttagtcttaggtattcatt 24721115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 25232286 - 25232132
Alignment:
Q  189 aacagttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaaccta--tttcgtcaagataatgactcaaaagaagcactaaat 285  Q
    |||| |||||||||||  ||| ||||||||||||||| | ||  |||||| |||||||||||  ||||| |||| |||||||||||| |||||  | |||    
T  25232286 aacacttagacatatccttcaagctcgggacgctaaacacgcgctgaataggaggcaacctatttttcg-caagctaatgactcaaatgaagcgttgaat 25232188  T
Q  286 aggagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    ||||  ||| |||||||||||   || ||| | |||||||||| | ||||||||||    
T  25232187 aggatgcaacctattgaccgtcaggactcaaatgttaaacaagtgttgaatgggag 25232132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 21328038 - 21327903
Alignment:
Q  130 actatatgcaagaccaaggtagttggagagaaaaaccagctgctcaaaagtctgaatgcaacagttagacatatctgtcaggctcgggacgctaaa-tag 228  Q
    ||||||||||||||| | ||||| | || |  ||| || || |||||| |||||||  ||||| ||||||||||  |||||| |||||||||||||  |     
T  21328038 actatatgcaagacctaagtagtggtagggggaaatcaacttctcaaaggtctgaaaacaacacttagacatattcgtcagggtcgggacgctaaacaaa 21327939  T
Q  229 cattgaataagaggcaacctatttcgtcaagataat 264  Q
    || |||||| |||| ||||||||| |||||| ||||    
T  21327938 cactgaataggaggaaacctattttgtcaagctaat 21327903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 19203266 - 19202934
Alignment:
Q  10 ataaggcttggtatgggcctttccaaataaattgcatctgcaagaacaatcttgttgagattaaggtccacaatagatggttcgccaaggtcctaattga 109  Q
    ||||||||||||||| ||||||| |||||||  |||| ||||||||||||| ||||||||| || | ||||| ||| ||| |  | ||||||| ||||||    
T  19203266 ataaggcttggtatgtgcctttcgaaataaaccgcatatgcaagaacaatcgtgttgagatcaaagaccacactaggtggatgacaaaggtcccaattga 19203167  T
Q  110 ggaagtcatgcacctgcgagactata-tgcaagaccaaggtagttggagagaaaaaccagctgctcaaaagtctgaatgcaacagttagacatatctgtc 208  Q
    ||||||||||||| |||||||||||| | || | | || |||||||||| ||||||||  |||||| |   ||||| |  |||| |||||||||| ||||    
T  19203166 ggaagtcatgcacgtgcgagactatattacatgtctaa-gtagttggagggaaaaaccgtctgctccaggatctgagtttaacacttagacatatatgtc 19203068  T
Q  209 aggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggagacaatctattgaccgta 307  Q
    |||||| ||| |||||  |  || ||| || ||||||| |||||||| |||| ||||||||||||||||||    |||||||| ||| |||||||||||     
T  19203067 aggctcaggaagctaaccacacactgagtaggaggcaatctatttcgacaagttaatgactcaaaagaagcgtcgaataggaggcaacctattgaccgtc 19202968  T
Q  308 gagattcagacgttaaacaagcgctgaatgggag 341  Q
    | || |||||||||||||||||||||||||||||    
T  19202967 gggactcagacgttaaacaagcgctgaatgggag 19202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 348
Target Start/End: Complemental strand, 1587092 - 1586974
Alignment:
Q  231 ttgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcg 330  Q
    ||||||| ||||||||||||| ||||||| || | ||| ||||||||| |||| |||||| ||| ||||||| ||| | || | ||||||||||||||||    
T  1587092 ttgaataggaggcaacctattccgtcaagctagtaacttaaaagaagctctaattaggaggcaacctattgatcgtcgggactgagacgttaaacaagcg 1586993  T
Q  331 ctgaatggg-agcaaccca 348  Q
    ||||||||| |||||||||    
T  1586992 ctgaatgggaagcaaccca 1586974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 13251488 - 13251547
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    ||||||||| | ||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  13251488 gcattacatttacaagttttcctcttatgcttaaatttgttttagtcttaggtattcatt 13251547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 23982 - 23767
Alignment:
Q  10 ataaggcttggtatgggcctttccaaataaattgcatctgcaagaacaatcttgttgagattaaggtccacaatagatggttcgccaaggtcctaattga 109  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||| | ||||||||| |||| ||||| ||||||| |  ||||||||| ||| ||    
T  23982 ataaggcttggtatgggcctttcgaaataaattgcatatgtaagaacaaccgtgttgagatcaaggaccacactagatggataaccaaggtcccaatgga 23883  T
Q  110 ggaagtcatgcacctgcgagactatatgcaagaccaaggtagttggagagaaaaaccagctgctcaaaagtctgaatgcaacagttagacatatctgtca 209  Q
    | |||||||||| ||||  |||||||||  || || | |||||||||| |||||| ||||||||||   ||  ||||  |||| ||||||||||| |||     
T  23882 gaaagtcatgcatctgcaggactatatggcaggcctaagtagttggagggaaaaatcagctgctcatgggtaagaataaaacacttagacatatccgtcc 23783  T
Q  210 ggctcgggacgctaaa 225  Q
    ||||||||||| ||||    
T  23782 ggctcgggacgttaaa 23767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 19054739 - 19054586
Alignment:
Q  189 aacagttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaatag 287  Q
    |||| ||||| |||| ||||||||||||||||||||| | ||  |||||| ||||||||||||||||| ||| |||||||| ||||||||| ||  ||||    
T  19054739 aacacttagagatatttgtcaggctcgggacgctaaacacgcggtgaataggaggcaacctatttcgttaagctaatgacttaaaagaagcgctggatag 19054640  T
Q  288 gagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    ||||||||||||||||||  | || ||||||||||||||| |||||||||||||    
T  19054639 gagacaatctattgaccgctgggactcagacgttaaacaaacgctgaatgggag 19054586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 24319005 - 24319155
Alignment:
Q  192 agttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggag 290  Q
    |||||||||||||||||||||||||||||||||| | ||  |||||| ||||||||||||||||||||| |||||| | |||||||||||| ||||||||    
T  24319005 agttagacatatctgtcaggctcgggacgctaaacacgcgctgaataggaggcaacctatttcgtcaagctaatgaatgaaaagaagcactgaataggag 24319104  T
Q  291 acaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
     ||| |||||||| || | || || ||| ||||| ||||| ||||||||||    
T  24319105 gcaacctattgactgttgggactcggacattaaaaaagcgttgaatgggag 24319155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 16783198 - 16783370
Alignment:
Q  179 gtctgaatgcaacagttagacatatctgtcaggctcgggacgctaaatag-cattgaataagaggcaacctatttc-gtcaagataatgactcaaaagaa 276  Q
    |||||| | ||||| ||||||||||| ||||| || ||||||||||| |  ||||||||| ||| ||||||||||  ||| || |||||||| |||||||    
T  16783198 gtctgagttcaacacttagacatatccgtcagacttgggacgctaaacacacattgaataggagacaacctatttttgtctagctaatgacttaaaagaa 16783297  T
Q  277 gcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatggga-gcaaccca 348  Q
    || || |||||||| ||| ||||| ||||| | || ||||||||| ||||||||||||| |||| ||||||||    
T  16783298 gcgctgaataggaggcaacctattaaccgtcgggactcagacgttgaacaagcgctgaaggggatgcaaccca 16783370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 25404883 - 25405032
Alignment:
Q  192 agttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggag 290  Q
    ||||||||||||| |||||||| ||||| ||||| | ||| | |||| || ||||||||||| |||||| ||||||||||||||||| | |  |||||||    
T  25404883 agttagacatatccgtcaggctagggactctaaacacgcactaaataggatgcaacctattttgtcaagttaatgactcaaaagaag-agtggataggag 25404981  T
Q  291 acaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
      || ||||||||| | | ||||||||||||||||||| | ||||||||||    
T  25404982 gaaacctattgaccatcgggattcagacgttaaacaagtgttgaatgggag 25405032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 16783497 - 16783556
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    ||||||||| | |||| |||||||||||||||||  ||||| ||||||||||||||||||    
T  16783497 gcattacatttacaacctttccttttatgcttaacattgttttagtcttaggtattcatt 16783556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 517
Target Start/End: Complemental strand, 19054447 - 19054400
Alignment:
Q  470 caacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||||||    
T  19054447 caacctttccttttatgcttaaatttgttttagtcgtaggtattcatt 19054400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 24319283 - 24319345
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    ||||||||| | |||| ||| |||||||||||||||||||| ||||||| |||||| ||||||    
T  24319283 gcattacatttacaaccttttcttttatgcttaaatttgttttagtctttggtatttatttca 24319345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 507
Target Start/End: Original strand, 25405163 - 25405209
Alignment:
Q  461 ttacatgttcaacttttccttttatgcttaaatttgttgtagtctta 507  Q
    |||||| | |||| |||||||||||||||||||||||| ||||||||    
T  25405163 ttacatttacaacctttccttttatgcttaaatttgttttagtctta 25405209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 341
Target Start/End: Original strand, 34275012 - 34275120
Alignment:
Q  233 gaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcgct 332  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||  | |||||||| ||  ||||||||||| | || ||||| |||||| |||||||    
T  34275012 gaataggaggcaacctatttcgtcaagctaatgactcaaaagtagcgttgaataggaggcagcctattgaccgtcgggactcagatgttaaagaagcgct 34275111  T
Q  333 gaatgggag 341  Q
    |||||||||    
T  34275112 gaatgggag 34275120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 458 - 520
Target Start/End: Complemental strand, 8767004 - 8766942
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    ||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  8767004 gcattacattttcaacctttccttttatgcttaaatttattttagtcttaggtattcatttca 8766942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 458 - 520
Target Start/End: Complemental strand, 8771887 - 8771825
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    ||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  8771887 gcattacatttacaacctttccttttatgcttaaatttgttttagtcttaggtattcatttca 8771825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 339
Target Start/End: Original strand, 12769709 - 12769854
Alignment:
Q  194 ttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggagac 292  Q
    |||||||||| ||||||||||||||||| ||| | |  ||||||| ||| ||||||||||| ||||| ||||||||||||||||   || |||||||| |    
T  12769709 ttagacatatatgtcaggctcgggacgcaaaacaagtgttgaataggagacaacctatttcatcaagctaatgactcaaaagaaatgctgaataggaggc 12769808  T
Q  293 aatctattgaccgtagagattcagacgttaaacaagcgctgaatggg 339  Q
    ||| |||||| ||| | || || ||||||||| ||||| ||||||||    
T  12769809 aat-tattgatcgtcgggactcggacgttaaagaagcgttgaatggg 12769854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 34275233 - 34275292
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    ||||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  34275233 gcattacatttacaacctttccttttatgcttaaatttgttttagtcttaggtattcatt 34275292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 337
Target Start/End: Complemental strand, 16227658 - 16227512
Alignment:
Q  192 agttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggag 290  Q
    |||||||||||| ||||| | | ||||||||||| | ||  |||||| |||  ||||||||||||||||  ||||||| |||||| ||| |  |||||||    
T  16227658 agttagacatatttgtcaagtttgggacgctaaacacgcgctgaataggagaaaacctatttcgtcaagccaatgactaaaaagacgcagtggataggag 16227559  T
Q  291 acaatctattgaccgtagagattcagacgttaaacaagcgctgaatg 337  Q
     ||| ||||||||||| |||| ||| || ||||||| ||||||||||    
T  16227558 gcaacctattgaccgtcgagactcacactttaaacatgcgctgaatg 16227512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 517
Target Start/End: Complemental strand, 13586929 - 13586887
Alignment:
Q  475 tttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  13586929 tttcattttatgcttaaatttgttttagtcttaggtattcatt 13586887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 520
Target Start/End: Original strand, 19166056 - 19166101
Alignment:
Q  475 tttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||    
T  19166056 tttccttttatgcttaaatttgtattagtcttaggtattcctttca 19166101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 518
Target Start/End: Original strand, 12770002 - 12770045
Alignment:
Q  475 tttccttttatgcttaaatttgttgtagtcttaggtattcattt 518  Q
    |||||||||  ||||||||||||| |||||||||||||||||||    
T  12770002 tttccttttgcgcttaaatttgttttagtcttaggtattcattt 12770045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 19577844 - 19577889
Alignment:
Q  296 ctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    |||||||||||   || |||||||||||||||||||||||||||||    
T  19577844 ctattgaccgtctggactcagacgttaaacaagcgctgaatgggag 19577889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 341
Target Start/End: Complemental strand, 28923157 - 28923007
Alignment:
Q  192 agttagacatatctgtcaggctcgggacgctaaata-gcattgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggag 290  Q
    |||||||| ||||||| ||||||||||||||||| | |||  || || ||||||||||||||||||||| |||||||| ||||||||   | ||||||||    
T  28923157 agttagacctatctgtaaggctcgggacgctaaacacgcaccgagtaggaggcaacctatttcgtcaagctaatgactaaaaagaagtgatgaataggag 28923058  T
Q  291 acaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
     | | ||||| | ||| | || ||||||||||||||| | |||||||||||    
T  28923057 gccacctattaatcgtcgggactcagacgttaaacaaacactgaatgggag 28923007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 25533571 - 25533512
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    ||||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25533571 gcattacatttacaacctttccttttatgcttaaatttgttttagtcttaggtattcatt 25533512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 520
Target Start/End: Complemental strand, 28922871 - 28922821
Alignment:
Q  470 caacttttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||||||||    
T  28922871 caacctttccttttatacttaaatttgttttagttttaggtattcatttca 28922821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 16816285 - 16816206
Alignment:
Q  262 aatgactcaaaagaagcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    ||||||||||||||| |||| || |||||  || ||||||| | | | || | |||||||||||||||||||||||||||    
T  16816285 aatgactcaaaagaatcactgaacaggaggaaacctattgatcatcgggactaagacgttaaacaagcgctgaatgggag 16816206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 16855442 - 16855363
Alignment:
Q  262 aatgactcaaaagaagcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    ||||||||||||||| |||| || |||||  || ||||||| | | | || | |||||||||||||||||||||||||||    
T  16855442 aatgactcaaaagaatcactgaacaggaggaaacctattgatcatcgggactaagacgttaaacaagcgctgaatgggag 16855363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 25924001 - 25923942
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    ||||||||| | |||| |||| |||||||||| ||||| || ||||||||||||||||||    
T  25924001 gcattacatttacaacctttctttttatgcttcaatttattttagtcttaggtattcatt 25923942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 12609479 - 12609382
Alignment:
Q  244 aacctatttcgtcaagataatgactcaaaagaagcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    |||||||||||| ||| ||||||||  |||||||| ||  ||||||||||| ||||||||||| |||| ||||||||||| |||||| ||||||||||    
T  12609479 aacctatttcgtaaagctaatgacttgaaagaagcgcttgataggagacaacctattgaccgtcgagactcagacgttaaccaagcgttgaatgggag 12609382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 520
Target Start/End: Original strand, 13130611 - 13130670
Alignment:
Q  461 ttacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    |||||||| |||| || ||||||||||||||||||||| |||||||| ||||||||||||    
T  13130611 ttacatgtacaaccttcccttttatgcttaaatttgttttagtcttaagtattcatttca 13130670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 513
Target Start/End: Original strand, 12402805 - 12402860
Alignment:
Q  458 gcattacatgttcaacttttccttttatgcttaaatttgttgtagtcttaggtatt 513  Q
    ||||||||| | |||| ||||||||||| |||||||||||| ||||||||||||||    
T  12402805 gcattacatttacaacctttccttttattcttaaatttgttttagtcttaggtatt 12402860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 520
Target Start/End: Complemental strand, 12609253 - 12609208
Alignment:
Q  475 tttccttttatgcttaaatttgttgtagtcttaggtattcatttca 520  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||    
T  12609253 tttccttttatatttaaatttgttttagtcataggtattcatttca 12609208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 341
Target Start/End: Original strand, 6172 - 6281
Alignment:
Q  232 tgaataagaggcaacctatttcgtcaagataatgactcaaaagaagcactaaataggagacaatctattgaccgt-agagattcagacgttaaacaagcg 330  Q
    |||||| ||| |||||||||||||||||||||| | ||||||||||   | |||||||||||| ||||||||| | ||| | | |||||||||| ||| |    
T  6172 tgaataggagacaacctatttcgtcaagataataattcaaaagaagtgatgaataggagacaacctattgaccatcaga-actaagacgttaaaaaagag 6270  T
Q  331 ctgaatgggag 341  Q
    |||||||||||    
T  6271 ctgaatgggag 6281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 18828914 - 18828843
Alignment:
Q  270 aaaagaagcactaaataggagacaatctattgaccgtagagattcagacgttaaacaagcgctgaatgggag 341  Q
    ||||||||| || |||||||| ||| |||||||  || | || |||||||||||||||||||||||||||||    
T  18828914 aaaagaagcgctgaataggaggcaacctattgagagttgggaatcagacgttaaacaagcgctgaatgggag 18828843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 18828695 - 18828655
Alignment:
Q  477 tccttttatgcttaaatttgttgtagtcttaggtattcatt 517  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  18828695 tccttttatgcttaaatttgttttagtcttgggtattcatt 18828655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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