View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16535_low_7 (Length: 523)
Name: NF16535_low_7
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 147 - 504
Target Start/End: Complemental strand, 33634084 - 33633727
Alignment:
| Q |
147 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
|
| Q |
247 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
346 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633984 |
tcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
33633885 |
T |
|
| Q |
347 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcggtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggcctc |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633884 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcggtgaaatttcttttacaggaagaacactatgtttcgaagctgaatttctcgtggcctc |
33633785 |
T |
|
| Q |
447 |
aagtatcgtgtgatcctggatttcctgctaggggaattagaactgtgcttgttagtta |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633784 |
aagtatcgtgtgatcctggatttcctgctaggggaattagaactgtgcttgttagtta |
33633727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33634233 - 33634151
Alignment:
| Q |
1 |
agagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33634233 |
agagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 147 - 389
Target Start/End: Original strand, 29191750 - 29191991
Alignment:
| Q |
147 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| | | |
|
|
| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
|
| Q |
247 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
346 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
29191850 |
tcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttctgtttt-cgctattacgtaatccatgcaactgaa |
29191948 |
T |
|
| Q |
347 |
ttttcattatcggaagtgacgaagcttgattcagtgttttcgg |
389 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29191949 |
ttttgattatcggaagtgacgaagcttgattcagtgttttcgg |
29191991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 389 - 504
Target Start/End: Original strand, 29192206 - 29192321
Alignment:
| Q |
389 |
gtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttcctgctaggggaattagaa |
488 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29192206 |
gtgatatttgttgtgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttcctgctaggggaattagaa |
29192305 |
T |
|
| Q |
489 |
ctgtgcttgttagtta |
504 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29192306 |
ctgtgcttgttagtta |
29192321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 389 - 470
Target Start/End: Complemental strand, 10668440 - 10668359
Alignment:
| Q |
389 |
gtgaaatttcttttgcaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtatcgtgtgatcctggatttc |
470 |
Q |
| |
|
||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10668440 |
gtgaaatttgttgtgtaggaagaacactatgtttcgaagctgaatttctcgtggcctcaagtattgtgtgatcctggatttc |
10668359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 29191596 - 29191683
Alignment:
| Q |
2 |
gagataattcaaacaaatggcgggaacagttgcagtaagatcaa---------actcactgagtgacgagtgggaaatttcgttcgca |
80 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
29191596 |
gagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttccttcgca |
29191683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University