View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16535_low_9 (Length: 489)

Name: NF16535_low_9
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16535_low_9
NF16535_low_9
[»] chr3 (12 HSPs)
chr3 (97-196)||(44694891-44694990)
chr3 (222-300)||(44694985-44695063)
chr3 (381-451)||(36755945-36756015)
chr3 (381-451)||(33796373-33796443)
chr3 (381-451)||(1436923-1436993)
chr3 (381-451)||(51698965-51699035)
chr3 (381-451)||(54099251-54099321)
chr3 (381-452)||(47742389-47742460)
chr3 (390-451)||(29781013-29781074)
chr3 (381-418)||(49021818-49021855)
chr3 (388-461)||(52485586-52485659)
chr3 (381-418)||(52714840-52714877)
[»] chr8 (10 HSPs)
chr8 (381-451)||(35067267-35067337)
chr8 (382-451)||(41639692-41639761)
chr8 (392-451)||(39453211-39453270)
chr8 (392-451)||(45405649-45405708)
chr8 (388-451)||(6440195-6440258)
chr8 (388-451)||(5574369-5574432)
chr8 (274-308)||(40670955-40670989)
chr8 (381-419)||(42619907-42619945)
chr8 (381-418)||(6972261-6972298)
chr8 (276-308)||(17492530-17492562)
[»] chr5 (9 HSPs)
chr5 (381-451)||(16690606-16690676)
chr5 (381-451)||(38493732-38493802)
chr5 (388-451)||(22098369-22098432)
chr5 (381-451)||(884548-884618)
chr5 (388-437)||(26686992-26687041)
chr5 (388-437)||(26956723-26956772)
chr5 (389-450)||(34940748-34940809)
chr5 (381-451)||(9168062-9168131)
chr5 (388-437)||(29687191-29687240)
[»] chr2 (11 HSPs)
chr2 (381-451)||(19843591-19843661)
chr2 (378-451)||(7084609-7084682)
chr2 (382-451)||(26290745-26290814)
chr2 (388-451)||(39309523-39309586)
chr2 (388-451)||(43658606-43658669)
chr2 (381-451)||(21738512-21738582)
chr2 (378-418)||(33616571-33616611)
chr2 (392-451)||(12070965-12071024)
chr2 (381-418)||(6336357-6336394)
chr2 (392-460)||(14328499-14328567)
chr2 (378-418)||(45259216-45259256)
[»] chr1 (8 HSPs)
chr1 (382-451)||(29359851-29359920)
chr1 (381-451)||(34817939-34818009)
chr1 (392-451)||(29877415-29877474)
chr1 (392-450)||(49020301-49020359)
chr1 (381-435)||(49570103-49570157)
chr1 (392-451)||(30519519-30519578)
chr1 (381-418)||(36750412-36750449)
chr1 (382-418)||(23665653-23665689)
[»] scaffold0662 (1 HSPs)
scaffold0662 (381-451)||(1251-1321)
[»] chr4 (6 HSPs)
chr4 (381-451)||(47015112-47015182)
chr4 (392-451)||(16019594-16019653)
chr4 (392-451)||(34757803-34757862)
chr4 (392-451)||(34759077-34759136)
chr4 (392-451)||(15522472-15522531)
chr4 (388-440)||(46665100-46665152)
[»] chr7 (8 HSPs)
chr7 (392-451)||(35822869-35822928)
chr7 (378-419)||(47012496-47012537)
chr7 (392-451)||(41430046-41430105)
chr7 (392-451)||(42584920-42584979)
chr7 (270-307)||(12102748-12102785)
chr7 (381-418)||(40854582-40854619)
chr7 (392-449)||(44496699-44496756)
chr7 (378-418)||(47954029-47954069)
[»] chr6 (1 HSPs)
chr6 (378-451)||(33651124-33651197)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 44694891 - 44694990
Alignment:
Q  97 gattgaagaggaaagtgatcaatataaacccgtaatacacccccaaccgctgcttggaagatagaaatagagagattgatgggatagatgtagtaataag 196  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||    
T  44694891 gattgaagaggaaagtgatcaatataaacccataatacacccccaaccgctgcttggaagatagaaacagagagagtgatgagatagatgtaataataag 44694990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 44694985 - 44695063
Alignment:
Q  222 aataagataataataaatagtaaacatttaaatgttggagatgtttaaatatagagaaataatatttgtacaatcattt 300  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  44694985 aataagataataataaatagtaaatatttaagtgttggagatgtttaaatatagagaaatgatatttgtacaattattt 44695063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 36756015 - 36755945
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  36756015 ccaacatatacttttctttgtaaaaatatggttgtcaatgtgattgtcaatcaaattgatattcaaataac 36755945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 33796373 - 33796443
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||||||||||    
T  33796373 ccaacacatacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaattgattttcaaataac 33796443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 1436923 - 1436993
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||||||||||||| |||||||||||| || | || ||||||||| ||||||||||    
T  1436923 ccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattgatgttcaaataac 1436993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 51698965 - 51699035
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||||||| ||||| |||||||||||| || |||| ||||||||| ||||||||||    
T  51698965 ccaacacatacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataac 51699035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 54099321 - 54099251
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| ||||||||||||||||||||||  |||||||||| ||| |||| ||||||||| ||||||||||    
T  54099321 ccaacatatacttttctttgtaaaaatatgattgtcaatgtaattgtcaaccaaattgatgttcaaataac 54099251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 47742389 - 47742460
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataacg 452  Q
    |||||| |||||| |||| |||||||||||||||| |||||| || |||| ||||||| | |||||||||||    
T  47742389 ccaacacatacttctcttcgtaaaaatatagttgttaatgtggttgtcaaccaaattgctgttcaaataacg 47742460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 29781013 - 29781074
Alignment:
Q  390 acttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||||||| |||||||||  ||||| || ||||| |||||||||||||| | ||||||||    
T  29781013 acttttctttataaaaatatgattgtccatatgattgtcaatcaaattgatgtccaaataac 29781074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 49021818 - 49021855
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  49021818 ccaacacatacttttctttgtaaaaatatggttgtcaa 49021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 52485586 - 52485659
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataacgcagctcttt 461  Q
    |||||||||||||||||||||| |||||| ||  | || |||| ||||| ||| |||||||||| || ||||||    
T  52485586 atacttttctttgtaaaaatatggttgtccattaggttgtcaaacaaatagatgttcaaataacacaactcttt 52485659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 52714840 - 52714877
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  52714840 ccaacacatacttttctttgtaaaaatatggttgtcaa 52714877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 35067267 - 35067337
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||||||||||||| |||||||||||| || |||| ||||||||| ||||||||||    
T  35067267 ccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataac 35067337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 41639761 - 41639692
Alignment:
Q  382 caacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||| |||||||||||||||||||||| |||||||| ||| || |||| ||||||||| ||||||||||    
T  41639761 caacacatacttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataac 41639692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 39453270 - 39453211
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||||||  ||||||||||| || |||||||||||||| ||||||||||    
T  39453270 ttttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataac 39453211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 45405649 - 45405708
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||||||||||||| ||||| || ||||||| |||||| ||||||||||    
T  45405649 ttttctttgtaaaaatatagttgtccatgtggttgtcaatcacattgatgttcaaataac 45405708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 6440195 - 6440258
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||||||||||||||||||| ||||||||| || || |||| ||| ||||| ||||||||||    
T  6440195 atacttttctttgtaaaaatatggttgtcaatttggttgtcaaccaagttgatgttcaaataac 6440258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 5574369 - 5574432
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||||||||||||||||||| | ||||||| |  || |||| ||||||||| ||||||||||    
T  5574369 atacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattgatgttcaaataac 5574432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 40670955 - 40670989
Alignment:
Q  274 agagaaataatatttgtacaatcatttgtgacaac 308  Q
    ||||||||||||||||||||| |||||||||||||    
T  40670955 agagaaataatatttgtacaaccatttgtgacaac 40670989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 42619945 - 42619907
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaat 419  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  42619945 ccaacacatacttttctttgtaaaaatatggttgtcaat 42619907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 6972261 - 6972298
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  6972261 ccaacacatacttttctttgtaaaaatatggttgtcaa 6972298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 17492530 - 17492562
Alignment:
Q  276 agaaataatatttgtacaatcatttgtgacaac 308  Q
    |||||| ||||||||||||||||||||||||||    
T  17492530 agaaatgatatttgtacaatcatttgtgacaac 17492562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 16690606 - 16690676
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||||||||||||| |||||||||||| || |||| ||||||||| ||||||||||    
T  16690606 ccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatattcaaataac 16690676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 38493732 - 38493802
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||||| ||||||| | |||||||||| || |||| ||||||||| ||||||||||    
T  38493732 ccaacacatacttttctttgttaaaatatgggtgtcaatgtggttgtcaaccaaattgatgttcaaataac 38493802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 22098369 - 22098432
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||||||||||||||||| | |||||| || | |||||||| ||||||||| ||||||||||    
T  22098369 atacttttctttgtaaaaatgtggttgtccatttaattatcaagcaaattgatgttcaaataac 22098432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 884548 - 884618
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| ||||||||| |||||||||||| ||||| ||| ||||| ||||  |||||||| ||||||||||    
T  884548 ccaacacatacttttcattgtaaaaatatggttgttaatatgattgtcaactaaattgatgttcaaataac 884618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 26686992 - 26687041
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaatt 437  Q
    |||||||||||||||||||||| |||||||||||  || |||||||||||    
T  26686992 atacttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaatt 26687041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 26956723 - 26956772
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaatt 437  Q
    |||||||||||||||||||||| |||||||||||  || |||||||||||    
T  26956723 atacttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaatt 26956772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 34940748 - 34940809
Alignment:
Q  389 tacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataa 450  Q
    ||||||||||| |||||||||  ||||||||||| || |||| ||||||||| |||||||||    
T  34940748 tacttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataa 34940809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 9168131 - 9168062
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| |||||||||||||| |||||||  |||||||| || || |||| ||||||||| ||||||||||    
T  9168131 ccaacacatacttttctttgt-aaaatatgattgtcaatatggttgtcaaccaaattgatgttcaaataac 9168062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 29687191 - 29687240
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaatt 437  Q
    ||||||||||||||||||||||||||||| || | ||| ||| |||||||    
T  29687191 atacttttctttgtaaaaatatagttgtccatataattgtcattcaaatt 29687240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 19843591 - 19843661
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||||    
T  19843591 ccaacacatacttttctttgtaaaaatataattgtcaatatgattgtcaaccaaattgatgttcaaataac 19843661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 7084682 - 7084609
Alignment:
Q  378 gtaccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||| || |||| ||||||||| ||||||||||    
T  7084682 gtaccaacacatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataac 7084609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 26290814 - 26290745
Alignment:
Q  382 caacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||| ||| ||||||||||||||||||  ||||||||||  ||||||| ||||||||| ||||||||||    
T  26290814 caacacatatttttctttgtaaaaatatgattgtcaatgtagttatcaaccaaattgatgttcaaataac 26290745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 39309523 - 39309586
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||||||||||  || ||||| ||||| |||| ||||||||| ||||||||||    
T  39309523 atacttttctttgtaaaaatatgattatcaatatgattgtcaaccaaattgattttcaaataac 39309586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 43658669 - 43658606
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||||||| |||||||||||| || || |||| |||||| || ||||||||||    
T  43658669 atacttttctttgtaaaaaaatagttgtcaatatggttgtcaaccaaattaatgttcaaataac 43658606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 21738582 - 21738512
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| ||| ||||||||||||||||||  ||||||||||  || |||| ||||||||| ||||||||||    
T  21738582 ccaacacatatttttctttgtaaaaatatgattgtcaatgtcgttgtcaaccaaattgatgttcaaataac 21738512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 33616571 - 33616611
Alignment:
Q  378 gtaccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  33616571 gtaccaacacatacttttctttgtaaaaatatggttgtcaa 33616611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 12070965 - 12071024
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||| || |||||| ||||| || ||||||| |||||| ||||||||||    
T  12070965 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataac 12071024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 6336357 - 6336394
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  6336357 ccaacacatacttttctttgtaaaaatatggttgtcaa 6336394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 460
Target Start/End: Original strand, 14328499 - 14328567
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataacgcagctctt 460  Q
    ||||||| ||||||||||| ||||| ||||| || ||||||| | |||| |||||||||| | ||||||    
T  14328499 ttttcttagtaaaaatataattgtccatgtggttgtcaatcacaatgatgttcaaataacactgctctt 14328567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 45259256 - 45259216
Alignment:
Q  378 gtaccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    ||||||||| ||||||||||||||||||||||  |||||||    
T  45259256 gtaccaacacatacttttctttgtaaaaatatgtttgtcaa 45259216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 29359851 - 29359920
Alignment:
Q  382 caacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||| |||||||||||| ||||||||| |||||||||||| || |||||||||||||| ||||||||||    
T  29359851 caacacatacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattgatgttcaaataac 29359920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 34818009 - 34817939
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||| ||| |||||||||||||||||| ||||||||| ||||| ||||  |||||||| ||||||||||    
T  34818009 ccaacacatatttttctttgtaaaaatatggttgtcaatatgattgtcaactaaattgatgttcaaataac 34817939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 29877415 - 29877474
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||||||||||||||| |||||| || ||||| ||||| |||||||| ||||||||||    
T  29877415 ttttctttgtaaaaatatggttgtccatatgattgtcaataaaattgatgttcaaataac 29877474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 49020359 - 49020301
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataa 450  Q
    |||||||||||||||||| ||||||||| || || |||| ||||||||| |||||||||    
T  49020359 ttttctttgtaaaaatatggttgtcaatttggttgtcaaccaaattgatgttcaaataa 49020301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 49570103 - 49570157
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaa 435  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| |||| ||||    
T  49570103 ccaacacatacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaa 49570157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 30519578 - 30519519
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||| || |||||| ||||| || ||||||| |||||| ||||||||||    
T  30519578 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataac 30519519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 36750449 - 36750412
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  36750449 ccaacacatacttttctttgtaaaaatatggttgtcaa 36750412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 23665689 - 23665653
Alignment:
Q  382 caacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  23665689 caacacatacttttctttgtaaaaatatggttgtcaa 23665653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 1251 - 1321
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||| ||||||||||||||||||||||||  ||||||||||| || |||| |||| |||| ||||||||||    
T  1251 ccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataac 1321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 47015112 - 47015182
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||| ||||||||||||||||||||||||  ||||||||||| || |||| |||| |||| ||||||||||    
T  47015112 ccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataac 47015182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 16019594 - 16019653
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||||| ||||||||| ||||||||| || || |||||||||||||| ||||||||||    
T  16019594 ttttctttataaaaatatggttgtcaatatgcttgtcaatcaaattgatgttcaaataac 16019653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 34757862 - 34757803
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||||||  |||||| ||||||| |||||||||||||| || |||||||    
T  34757862 ttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataac 34757803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 34759136 - 34759077
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||||||  |||||| ||||||| |||||||||||||| || |||||||    
T  34759136 ttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataac 34759077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 15522472 - 15522531
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||| || |||||| ||||| || ||||||| |||||| ||||||||||    
T  15522472 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataac 15522531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 46665152 - 46665100
Alignment:
Q  388 atacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgat 440  Q
    ||||||||||||||||| |||| ||||||||| || || |||||||| |||||    
T  46665152 atacttttctttgtaaatatatggttgtcaatttggttgtcaatcaagttgat 46665100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 35822928 - 35822869
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    |||||||||||||||||| |||||||| ||| || |||| ||||||||| ||||||||||    
T  35822928 ttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataac 35822869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 47012537 - 47012496
Alignment:
Q  378 gtaccaacagatacttttctttgtaaaaatatagttgtcaat 419  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  47012537 gtaccaacatatacttttctttgtaaaaatatggttgtcaat 47012496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 41430105 - 41430046
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||| || |||||| ||||| || ||||||| |||||| ||||||||||    
T  41430105 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataac 41430046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 42584920 - 42584979
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||||||||||| || |||||| ||||| || ||||||| |||||| ||||||||||    
T  42584920 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataac 42584979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 12102785 - 12102748
Alignment:
Q  270 atatagagaaataatatttgtacaatcatttgtgacaa 307  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  12102785 atatagagaaatgatatttgttcaatcatttgtgacaa 12102748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 40854619 - 40854582
Alignment:
Q  381 ccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  40854619 ccaacacatacttttctttgtaaaaatatggttgtcaa 40854582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 44496756 - 44496699
Alignment:
Q  392 ttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaata 449  Q
    |||||||||||||||||| |||||| || | ||| |||| ||||||||| ||||||||    
T  44496756 ttttctttgtaaaaatatggttgtccatttaattgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 47954069 - 47954029
Alignment:
Q  378 gtaccaacagatacttttctttgtaaaaatatagttgtcaa 418  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  47954069 gtaccaacacatacttttctttataaaaatatggttgtcaa 47954029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 33651124 - 33651197
Alignment:
Q  378 gtaccaacagatacttttctttgtaaaaatatagttgtcaatgtgattatcaatcaaattgatcttcaaataac 451  Q
    ||||||| | ||| |||||||||||||||||| |||||| || ||||| |||| ||||| ||| ||||||||||    
T  33651124 gtaccaatacataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataac 33651197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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