View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16536_high_10 (Length: 253)

Name: NF16536_high_10
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16536_high_10
NF16536_high_10
[»] chr5 (4 HSPs)
chr5 (32-243)||(21584694-21584905)
chr5 (1-38)||(35818419-35818456)
chr5 (1-38)||(10029132-10029169)
chr5 (1-40)||(31455940-31455980)
[»] scaffold0689 (1 HSPs)
scaffold0689 (179-240)||(2032-2093)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-38)||(20832-20869)
[»] chr8 (3 HSPs)
chr8 (1-38)||(42363636-42363673)
chr8 (1-38)||(41554805-41554842)
chr8 (198-238)||(9230909-9230949)
[»] chr7 (7 HSPs)
chr7 (1-38)||(19233398-19233435)
chr7 (1-38)||(27513019-27513056)
chr7 (1-38)||(30757442-30757479)
chr7 (1-38)||(34404653-34404690)
chr7 (1-38)||(37452109-37452146)
chr7 (1-36)||(3925851-3925886)
chr7 (1-38)||(3925976-3926013)
[»] chr6 (3 HSPs)
chr6 (1-38)||(31833484-31833521)
chr6 (1-38)||(30965749-30965787)
chr6 (1-38)||(3195930-3195967)
[»] chr4 (5 HSPs)
chr4 (1-38)||(232909-232946)
chr4 (1-38)||(24542961-24542998)
chr4 (1-36)||(13019331-13019366)
chr4 (1-38)||(29432105-29432142)
chr4 (198-238)||(18351639-18351679)
[»] chr3 (4 HSPs)
chr3 (1-38)||(5153839-5153876)
chr3 (1-38)||(29168787-29168824)
chr3 (1-38)||(14015221-14015258)
chr3 (1-38)||(24393749-24393786)
[»] chr2 (1 HSPs)
chr2 (1-38)||(34981600-34981637)
[»] chr1 (5 HSPs)
chr1 (1-38)||(12071702-12071739)
chr1 (1-38)||(25098349-25098386)
chr1 (1-38)||(32558270-32558307)
chr1 (1-38)||(29794751-29794789)
chr1 (1-38)||(34988148-34988186)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 21584694 - 21584905
Alignment:
Q  32 tgattctattatacacttgaacacttgacggtgaatttatgaatgtaattggatggactaggaattgaatagtgatgcatagataaagttggggttgtag 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21584694 tgattctattatacacttgaacacttgacggtgaatttatgaatgtaattggatggactaggaattgaatagtgatgcatagataaagttggggttgtag 21584793  T
Q  132 ataagacttggaatgaatgattttctataaatatttgggagttccacttcctctattcaatcattttccttcttcttgttacgggatatctcgttcatac 231  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21584794 ataagacttggaatgaatgattttctataaatatttgggagtttcacttcctctattcaatcattttccttcttcttgttactggatatctcgttcatac 21584893  T
Q  232 atatcttctgtg 243  Q
    ||||||||||||    
T  21584894 atatcttctgtg 21584905  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35818456 - 35818419
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  35818456 ctaatttaaatacaaaacagcccctatgttttgattct 35818419  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10029132 - 10029169
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  10029132 ctaatttaaatacaaaatagcccctatgttttgattct 10029169  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31455940 - 31455980
Alignment:
Q  1 ctaatttaaatacaaaacag-cccctaagttttgattctat 40  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  31455940 ctaatttaaatacaaaacagccccctatgttttgattctat 31455980  T

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Target: scaffold0689 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 2032 - 2093
Alignment:
Q  179 ttcctctattcaatcattttccttcttcttgttacgggatatctcgttcatacatatcttct 240  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||| |||| |||||||    
T  2032 ttcctctattcaatccttttccttcttcttgttgctggatatctcgttcgtacacatcttct 2093  T

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Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20869 - 20832
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20869 ctaatttaaatacaaaacagcccctatgttttgattct 20832  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42363636 - 42363673
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42363636 ctaatttaaatacaaaacagcccctatgttttgattct 42363673  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41554842 - 41554805
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  41554842 ctaatttaaatacaaaacaacccctatgttttgattct 41554805  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 9230949 - 9230909
Alignment:
Q  198 tccttcttcttgttacgggatatctcgttcatacatatctt 238  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  9230949 tccttcttcttgttaccggatatctcgttcagacacatctt 9230909  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19233398 - 19233435
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  19233398 ctaatttaaatacaaaacagcccctatgttttgattct 19233435  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27513056 - 27513019
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  27513056 ctaatttaaatacaaaacagcccctatgttttgattct 27513019  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30757479 - 30757442
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  30757479 ctaatttaaatacaaaacagcccctatgttttgattct 30757442  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34404690 - 34404653
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34404690 ctaatttaaatacaaaacagcccctatgttttgattct 34404653  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37452109 - 37452146
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  37452109 ctaatttaaatacaaaacagcccctatgttttgattct 37452146  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3925851 - 3925886
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgatt 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  3925851 ctaatttaaatacaaaacagcccctatgttttgatt 3925886  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3926013 - 3925976
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  3926013 ctaatttaaatacaaaacaacccctatgttttgattct 3925976  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31833521 - 31833484
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  31833521 ctaatttaaatacaaaacagcccctatgttttgattct 31833484  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30965749 - 30965787
Alignment:
Q  1 ctaatttaaatacaaaacagcccc-taagttttgattct 38  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  30965749 ctaatttaaatacaaaacagccccttaagttttgattct 30965787  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3195967 - 3195930
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  3195967 ctaatttaaatataaaacagcccctatgttttgattct 3195930  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 232946 - 232909
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  232946 ctaatttaaatacaaaacagcccctatgttttgattct 232909  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24542998 - 24542961
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  24542998 ctaatttaaatacaaaacagcccctatgttttgattct 24542961  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13019331 - 13019366
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgatt 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  13019331 ctaatttaaatacaaaacagcccctatgttttgatt 13019366  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29432105 - 29432142
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  29432105 ctaatttaaatacaaaatagcccctatgttttgattct 29432142  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 18351639 - 18351679
Alignment:
Q  198 tccttcttcttgttacgggatatctcgttcatacatatctt 238  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  18351639 tccttcttcttgttaccggatatctcgttcagacacatctt 18351679  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5153839 - 5153876
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5153839 ctaatttaaatacaaaacagcccctatgttttgattct 5153876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29168787 - 29168824
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  29168787 ctaatttaaatacaaaacagcccctatgttttgattct 29168824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14015221 - 14015258
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  14015221 ctaatttaaatacaaaacagcctctatgttttgattct 14015258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24393749 - 24393786
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  24393749 ctaatttaaatacaaaacagcccatatgttttgattct 24393786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34981637 - 34981600
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34981637 ctaatttaaatacaaaacagcccctatgttttgattct 34981600  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12071702 - 12071739
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  12071702 ctaatttaaatacaaaacagcccctatgttttgattct 12071739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25098386 - 25098349
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25098386 ctaatttaaatacaaaacagcccctatgttttgattct 25098349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32558270 - 32558307
Alignment:
Q  1 ctaatttaaatacaaaacagcccctaagttttgattct 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  32558270 ctaatttaaatacaaaacagcccctatgttttgattct 32558307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29794751 - 29794789
Alignment:
Q  1 ctaatttaaatacaaaacag-cccctaagttttgattct 38  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  29794751 ctaatttaaatacaaaacagccccctaagttttgattct 29794789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34988148 - 34988186
Alignment:
Q  1 ctaatttaaatacaaaacag-cccctaagttttgattct 38  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  34988148 ctaatttaaatacaaaacagccccctaagttttgattct 34988186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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