View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16536_high_2 (Length: 462)
Name: NF16536_high_2
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16536_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 23 - 446
Target Start/End: Original strand, 42634342 - 42634765
Alignment:
| Q |
23 |
cacagagataaatggcaatgtggtagttaatggaatggaaaacaaatatttttcgaagaagttgagttttctattgtattgttaannnnnnnnnnnnnnn |
122 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42634342 |
cacaaagacaaatggcaatgtgttagttaatggaatggaaaacatatattttttgaagaagttgagttttctattgtattgttaattttttatttttttt |
42634441 |
T |
|
| Q |
123 |
aaatgaaaccaatttcattaaaaaggatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42634442 |
aaatgaaaccaatttcattaaaaaggatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaattttgctaagtaatgtgcagcatag |
42634541 |
T |
|
| Q |
223 |
ttagccacgcgtctaacatgagcaaaactaatagaattaaagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgatacatcgt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42634542 |
ttagccacgcgtctaacatgagcaaaactaatagaattaaagctaagactaagtttgatgcactcatttacaattgtttctaaatatgtcgatacatcgt |
42634641 |
T |
|
| Q |
323 |
ctccaattgccgtaatcacattccttgaatctgattaagttgtccttaatattgtggtaaccatctacaaaactccaacaacatcttccataactaatat |
422 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42634642 |
ctccaattgccgtaatcacattccatgaatctgattaagttctccttaatattgtggtaaccatctacaaaactccaacaacatcttccataactaatat |
42634741 |
T |
|
| Q |
423 |
aaaatgctaaaatccccattatac |
446 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42634742 |
aaaatgctaaaatccccattatac |
42634765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 162 - 356
Target Start/End: Original strand, 25518169 - 25518369
Alignment:
| Q |
162 |
gatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaaaactaatagaatta |
261 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||| | ||||||||| || |||||||||||||| ||||| |||||| |
|
|
| T |
25518169 |
gatccaaacaaagtccgaattggatgaaagagcaaattttgctaagtaatgcgcagcttggttagccacacgcctaacatgagcaaagctaattgaatta |
25518268 |
T |
|
| Q |
262 |
aagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgataca------tcgtctccaattgccgtaatcacattccttgaatctg |
355 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| || ||||||| || |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25518269 |
aagctaggacttagtttgatgcactcatttacaattgttcctaaataggttgatacatgaaactcgtcttcaattgccgtaatcacattccttgaatctg |
25518368 |
T |
|
| Q |
356 |
a |
356 |
Q |
| |
|
| |
|
|
| T |
25518369 |
a |
25518369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 148 - 358
Target Start/End: Complemental strand, 37433273 - 37433058
Alignment:
| Q |
148 |
gatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaa |
247 |
Q |
| |
|
||||| |||||||||||||| |||| ||| |||||||| |||||||||||||| |||||||||| || | | ||||||||| || |||||| |||||| |
|
|
| T |
37433273 |
gatggggtttcttcgatccatacaaagtctgaattggaagaaagagcaaattttgctaagtaatgcacaacttggttagccacacgcctaacacgagcaa |
37433174 |
T |
|
| Q |
248 |
aactaatagaattaaagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgataca------tcgtctccaattgccgtaatcac |
341 |
Q |
| |
|
| |||||| | |||||| || |||| | |||||||| |||||||||||| || ||||||| ||| ||||| |||||| |||| |||||||||| |
|
|
| T |
37433173 |
agctaatatagttaaagttaggactta-attgatgcattcatttacaattgttcctaaataggtcaatacatgaaactcgtcttcaatcaccgtaatcac |
37433075 |
T |
|
| Q |
342 |
attccttgaatctgatt |
358 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37433074 |
attccttgaatctgatt |
37433058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 31617054 - 31617004
Alignment:
| Q |
269 |
gactaagtttgatgcactcatttacaattttttctaaatatgtcgatacat |
319 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
31617054 |
gacttagtttgatacactcatttacaattgtttctaaataggtcaatacat |
31617004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 31617120 - 31617071
Alignment:
| Q |
163 |
atccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatg |
212 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
31617120 |
atccaaactaggtccgaattggatgaaagataaaattttgctaagtaatg |
31617071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 148 - 358
Target Start/End: Original strand, 7184768 - 7184976
Alignment:
| Q |
148 |
gatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaa |
247 |
Q |
| |
|
|||||||||||||||||||||||| || | |||| | | |||||| ||||||| ||| |||||| ||| | | ||||||||| || ||||||||||||| |
|
|
| T |
7184768 |
gatggagtttcttcgatccaaacagagttcaaattaggtgaaagagaaaattttgctaggtaatgcgcaacttggttagccacacgcctaacatgagcaa |
7184867 |
T |
|
| Q |
248 |
aactaatagaattaaagctaagactaagtttgatgcactcatttacaattttttctaaatatgtcgatacatcgtctccaattgccgtaatcacattcct |
347 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||| ||||||||||||| || ||||||| | || | | |||| ||||||| |||||||||||||| |
|
|
| T |
7184868 |
aactaatagagttaaagctaggacttggtttgatgccctcatttacaattgttcctaaatacat-ga-agcttgtcttcaattgcagtaatcacattcct |
7184965 |
T |
|
| Q |
348 |
tgaatctgatt |
358 |
Q |
| |
|
||||| ||||| |
|
|
| T |
7184966 |
tgaatttgatt |
7184976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 30941892 - 30941983
Alignment:
| Q |
204 |
taagtaatgtgcagcatagttagccacgcgtctaacatgagcaaaactaatagaattaaagctaagactaagtttgatgcactcatttacaa |
295 |
Q |
| |
|
||||||||||||||| | |||||| || ||||||| ||||||||| |||||||||||||||||| | | |||||||| ||||| ||||||| |
|
|
| T |
30941892 |
taagtaatgtgcagcttggttagctacacgtctaatatgagcaaagctaatagaattaaagctagaatttagtttgatacactcgtttacaa |
30941983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 20589313 - 20589198
Alignment:
| Q |
148 |
gatggagtttcttcgatccaaacaaggtccgaattggataaaagagcaaatttttctaagtaatgtgcagcatagttagccacgcgtctaacatgagcaa |
247 |
Q |
| |
|
||||||||| |||||||||||| || || ||||||||| ||||||||||| || |||| ||||| |||| | ||||||||| | |||||||||| || |
|
|
| T |
20589313 |
gatggagttacttcgatccaaaaaaagtttgaattggatgaaagagcaaatattgctaaataatgctcagcttggttagccacacacctaacatgagtaa |
20589214 |
T |
|
| Q |
248 |
aactaatagaattaaa |
263 |
Q |
| |
|
| |||||| ||||||| |
|
|
| T |
20589213 |
agctaataaaattaaa |
20589198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University