View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16536_low_1 (Length: 555)
Name: NF16536_low_1
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16536_low_1 |
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| [»] scaffold0526 (2 HSPs) |
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Alignment Details
Target: scaffold0526 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 548
Target Start/End: Original strand, 6250 - 6775
Alignment:
| Q |
20 |
aaagaagtgtttgtggggaaatatggggagtggattttgaatagagtgatttgggaggataatcttttcaatggtgtgcatcaagtttgtgagaaacatt |
119 |
Q |
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| T |
6250 |
aaagaagtgtttgtggggaaatatggggaatggattttgagtagagtgatttgggaggataatcttttcaatggtgtgcatcaagttggtgagaaacatt |
6349 |
T |
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| Q |
120 |
tgtactttagatgtagcggtcaataataattggtccatgggaaaactagtttttaagctagagaggtggattggaagtgcatctcttcgcaatcaattcc |
219 |
Q |
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| T |
6350 |
tgtactttagatgtagcagtcaggggt---tggtccatgggaaaactagtttttaagctcgagaggtggattggaagtgcatctcttcgcaatcaattcc |
6446 |
T |
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| Q |
220 |
tacgattgttttatatttttcatcaaaaggaagctacgatttgtgatttgagggcctttgaacgaggagtgtcgagatgagtctttatcttgcggaggat |
319 |
Q |
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| T |
6447 |
tacgattgttttattgatttcttcaaaaggaatctaccatatgtgatttgagggcctttgaaggaggagtgtcgagatgagtctttatcttgcggaggat |
6546 |
T |
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| Q |
320 |
tttgagggcctttgtatataaagtaacgcatacgtaaaaattaaaaagacaagataaagcacctttttgtttttgatattgtgttgatcaacagcaaaac |
419 |
Q |
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| T |
6547 |
tttgagggcctttgtatataaagtaccgcatacgtaaaaatttaaaagacaagataaagcacctttttgtttttgatattgtgttgatcaacagcaaaac |
6646 |
T |
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| Q |
420 |
gagccaagttattggtggtaggaggatggattgggttcaacttcttctcttttgttgtggtcgttaggtctttacagctttgctctgtttgggaaaatcc |
519 |
Q |
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| T |
6647 |
gagccaagttattgatggtaggaggatcgattggattcaacttcttcgattttgttgtgatcgttaggtctttgcagctttgctctgtttgggaaaatcc |
6746 |
T |
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| Q |
520 |
tgccgcccatatactatccgcctttgctt |
548 |
Q |
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| T |
6747 |
tgccgcccatatactagccgcctttgctt |
6775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 391 - 521
Target Start/End: Original strand, 1918 - 2048
Alignment:
| Q |
391 |
tttgatattgtgttgatcaacagcaaaacgagccaagttattggtggtaggaggatggattgggttcaacttcttctcttttgttgtggtcgttaggtct |
490 |
Q |
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| T |
1918 |
tttgatattgtgttcatcaacagcaaaacgagccaatttatcggtggtaggtggatcgattggattcaacttcttcactacggttgaggtcgttaggtct |
2017 |
T |
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| Q |
491 |
ttacagctttgctctgtttgggaaaatcctg |
521 |
Q |
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| T |
2018 |
ttatggctttgctctccttgtgaaaatcctg |
2048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 366 - 504
Target Start/End: Complemental strand, 18863661 - 18863524
Alignment:
| Q |
366 |
agacaagataaagcacctttttgtttttgatattgtgttgatcaacagcaaaacgagccaagttattggtggtaggaggatggattgggttcaacttctt |
465 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||| |
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| T |
18863661 |
agacaagaaaaagcacctctttgtttttgatattgtgttgatcaacagcaaaacgagccaagttatcggtggtagg-ggatcgattggactcaacttctt |
18863563 |
T |
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| Q |
466 |
ctcttttgttgtggtcgttaggtctttacagctttgctc |
504 |
Q |
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| T |
18863562 |
cactacggttgaggtcgttaggtctttaccgctctgctc |
18863524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 370 - 521
Target Start/End: Complemental strand, 18859799 - 18859648
Alignment:
| Q |
370 |
aagataaagcacctttttgtttttgatattgtgttgatcaacagcaaaacgagccaagttattggtggtaggaggatggattgggttcaacttcttctct |
469 |
Q |
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| T |
18859799 |
aagaaaaagcacctctttgtgttcgatattgtgtagatcaacagcaaaacgagccaagttatcggtggtaggtgggtcgaatggattcaacttcttcact |
18859700 |
T |
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| Q |
470 |
tttgttgtggtcgttaggtctttacagctttgctctgtttgggaaaatcctg |
521 |
Q |
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| T |
18859699 |
acggttgaggttgttaggtctttatggctttgctctacttgtgaaaatcctg |
18859648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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