View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16536_low_10 (Length: 323)
Name: NF16536_low_10
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16536_low_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 41771117 - 41770813
Alignment:
| Q |
19 |
gcaacaaacctttgtcttctccttagtttcatctttcttgccagtcaagaaacccatagctctcttagcagcatctgcagctgaatccttcaactctcca |
118 |
Q |
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| T |
41771117 |
gcaacaaacccttgtcttctccttagtttcatctttcttgccagtcaagaaacccatagctctcttagcagcatctgcagctgaatccttcaactctcca |
41771018 |
T |
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| Q |
119 |
agcttccccacggtggtatccttagcttctacagccttctcagcagtataatccttatactctccagctttgttcactgtagcatctttagcttctccag |
218 |
Q |
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| T |
41771017 |
agcttccccacggtggtatccttagcttctacagccttctcagcagtataatccttatactctccagctttgttcactgtagcatctttagcttctccag |
41770918 |
T |
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| Q |
219 |
ccttctgcaccgttgcatcctttgcctgcttcgccttatcagcagcatagttcgtatactccccagctttgttcaccgttgcatccttcgcttccttcgc |
318 |
Q |
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| T |
41770917 |
ccttctgcaccgttgcatcctttgcctgcttcgccttatcagcagcatagttcgtatactccccagctttgttcaccgttgcatccttcgcttccttcgc |
41770818 |
T |
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| Q |
319 |
cttct |
323 |
Q |
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||||| |
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| T |
41770817 |
cttct |
41770813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 41770844 - 41770782
Alignment:
| Q |
226 |
caccgttgcatcctttgcctgcttcgccttatcagcagcatagttcgtatactccccagcttt |
288 |
Q |
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| T |
41770844 |
caccgttgcatccttcgcttccttcgccttctctgcagcatagtttgtatactcccctgcttt |
41770782 |
T |
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