View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16536_low_12 (Length: 268)
Name: NF16536_low_12
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16536_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 23698246 - 23698145
Alignment:
| Q |
153 |
gtgatctaaccgaacactccgttgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaaatttggtataagatgtaataattg |
252 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23698246 |
gtgatctaaccgaacactccattgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaagtttggtataagatgtaataattg |
23698147 |
T |
|
| Q |
253 |
tt |
254 |
Q |
| |
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|| |
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| T |
23698146 |
tt |
23698145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 23716701 - 23716600
Alignment:
| Q |
153 |
gtgatctaaccgaacactccgttgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaaatttggtataagatgtaataattg |
252 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23716701 |
gtgatctaaccgaacactccattgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaagtttggtataagatgtaataattg |
23716602 |
T |
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| Q |
253 |
tt |
254 |
Q |
| |
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|| |
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| T |
23716601 |
tt |
23716600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 23735157 - 23735056
Alignment:
| Q |
153 |
gtgatctaaccgaacactccgttgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaaatttggtataagatgtaataattg |
252 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23735157 |
gtgatctaaccgaacactccattgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaagtttggtataagatgtaataattg |
23735058 |
T |
|
| Q |
253 |
tt |
254 |
Q |
| |
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|| |
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|
| T |
23735057 |
tt |
23735056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 23754821 - 23754720
Alignment:
| Q |
153 |
gtgatctaaccgaacactccgttgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaaatttggtataagatgtaataattg |
252 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23754821 |
gtgatctaaccgaacactccattgatcgaaattacaattctacaagagatggttcagaagaattccctggtcaaaagtttggtataagatgtaataattg |
23754722 |
T |
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| Q |
253 |
tt |
254 |
Q |
| |
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|| |
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| T |
23754721 |
tt |
23754720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 23698380 - 23698312
Alignment:
| Q |
19 |
tcaagctgttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
87 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23698380 |
tcaagctgttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
23698312 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 23716835 - 23716767
Alignment:
| Q |
19 |
tcaagctgttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23716835 |
tcaagctgttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
23716767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 23735291 - 23735223
Alignment:
| Q |
19 |
tcaagctgttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
87 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23735291 |
tcaagctgttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
23735223 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 23769544 - 23769484
Alignment:
| Q |
27 |
ttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
87 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
23769544 |
ttgagtttcttgtttattttctgttcaatcttggattctcagccacatatgtttcatcaca |
23769484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 23701179 - 23701120
Alignment:
| Q |
27 |
ttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
87 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |
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| T |
23701179 |
ttgagtttcttgtttattttctgttcaatcttggattctc-gccacatatgtttcatcaca |
23701120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 23719634 - 23719575
Alignment:
| Q |
27 |
ttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
87 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |
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| T |
23719634 |
ttgagtttcttgtttattttctgttcaatcttggattctc-gccacatatgtttcatcaca |
23719575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 23738090 - 23738031
Alignment:
| Q |
27 |
ttgagtttcttgtttatttcttgttcaatcttggattctcagctacatatgtttcatcaca |
87 |
Q |
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||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |
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| T |
23738090 |
ttgagtttcttgtttattttctgttcaatcttggattctc-gccacatatgtttcatcaca |
23738031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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