View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16536_low_2 (Length: 485)
Name: NF16536_low_2
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16536_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Complemental strand, 54794057 - 54793596
Alignment:
| Q |
16 |
aagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcataaccaccacttggattgtattcatttacttcttt |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |
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| T |
54794057 |
aagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagaatacccaccacttgggttgtattcatttacttcttt |
54793958 |
T |
|
| Q |
116 |
caaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatata |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793957 |
caaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatata |
54793858 |
T |
|
| Q |
216 |
acagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatca |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54793857 |
acagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatca |
54793758 |
T |
|
| Q |
316 |
ttcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793757 |
ttcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgag |
54793658 |
T |
|
| Q |
416 |
aaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattcatttc |
477 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54793657 |
aaacaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattcttttc |
54793596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Complemental strand, 52286738 - 52286277
Alignment:
| Q |
16 |
aagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcataaccaccacttggattgtattcatttacttcttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
52286738 |
aagtaataacttcttttagtgttgccttcctctgttccttgaagttccacagctcatatacagcatacccaccacttggattgtattcatttacttcttt |
52286639 |
T |
|
| Q |
116 |
caaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatata |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
52286638 |
caaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaacttctcatcttcctcattcatgactgactgtgtcaatata |
52286539 |
T |
|
| Q |
216 |
acagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatca |
315 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
52286538 |
atagtattaccgtgttaattattatactatttctacattgaggcataactactgcaaaaacacagagcatgtctttatggtacataccacatggctatca |
52286439 |
T |
|
| Q |
316 |
ttcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgag |
415 |
Q |
| |
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||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
52286438 |
ttctctctgacgactttaaaagggtgccaagctgaattcttcacattctcctgccaaaaagagcaaagctccatggccttcatcccagcttcttcttcag |
52286339 |
T |
|
| Q |
416 |
aaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattcatttc |
477 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||| |||| |
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|
| T |
52286338 |
aaagaaatcttttcttgcagacattcacaaaaactttctgatcaaggtctcccattcttttc |
52286277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 54775582 - 54775932
Alignment:
| Q |
16 |
aagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcataaccaccacttggattgtattcatttacttcttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
54775582 |
aagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcatacccaccacttgggttgtattcatttacttcttt |
54775681 |
T |
|
| Q |
116 |
caaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54775682 |
caaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagctttttcaatttctcatcttcctcatttataactgactgtgtcaatata |
54775781 |
T |
|
| Q |
216 |
acagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
54775782 |
acagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatca |
54775881 |
T |
|
| Q |
316 |
ttcactctgaccactttaaaagggtgccatgctgaatttttcacattctcc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
54775882 |
ttcactctgaccactttaaaagggtgccatgctgaatttttcacatgctcc |
54775932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 470
Target Start/End: Complemental strand, 801893 - 801450
Alignment:
| Q |
24 |
acttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcataaccaccacttggattgtattcatttacttctttcaaggctg |
123 |
Q |
| |
|
|||||||| |||||||||||||| | ||| ||||||||||| ||||| |||| ||| ||||||||||| ||||| || || |||||||| ||||||| |
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|
| T |
801893 |
acttctttcagtgttgccttcctattttctttgaagttccacagctcccaaacagtatacccaccacttgggttgtactcgttaacttcttttaaggctg |
801794 |
T |
|
| Q |
124 |
tttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacagtatt |
223 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||||||||||||| |||| |||| |
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|
| T |
801793 |
ttacaacagctgaatatatctcgtctccccattccttcttcagcttttgtagtttctcatcttcctcatctataactgactgtgtcaatacaacaatatt |
801694 |
T |
|
| Q |
224 |
accgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactct |
323 |
Q |
| |
|
||||||||||||| || ||||||||| ||||| || |||| ||| ||||||||||||||||| ||||| |||||||||| | | |||||||| || |
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|
| T |
801693 |
accgtgttaattattacactatttctctattgaggcttagccactccaaaaacacagagcatggctttagggtacataccacggggttatcattctgact |
801594 |
T |
|
| Q |
324 |
gaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaat |
423 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| |||||||| | |||||||||||| | |||||| ||||||||||| || |||| |||| |
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| T |
801593 |
gaccactttaaaagggtgccaagctgagttcttcacattttcctgccataaagagcaaagctcaacggcctttatcccagcttcatc---agaagaaaat |
801497 |
T |
|
| Q |
424 |
cttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccat |
470 |
Q |
| |
|
|||||||||||| | | |||||||||||||| |||||||||||||| |
|
|
| T |
801496 |
cttttcttgcaggcattcacaaaaaccttctggtcaaggtctcccat |
801450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 477
Target Start/End: Original strand, 54775950 - 54775985
Alignment:
| Q |
442 |
acaaaaaccttctcatcaaggtctcccattcatttc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattcttttc |
54775985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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