View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16536_low_4 (Length: 458)
Name: NF16536_low_4
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16536_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 51495177 - 51494983
Alignment:
| Q |
17 |
agtgaaccctaaacctaactattgggtttcttcagctaaaaaatacgagatttgattcgacacgcttaatagttttttcgggaaaataaataaataaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51495177 |
agtgaaccctaaacctaactattggttttcttcagctaaaaaatacgagatttgattcgacacgcttaatagttttttcgg-aaaataaataaataaaca |
51495079 |
T |
|
| Q |
117 |
attaatttagaggaaaagagagggagagttttcaaatccactaccaagattgtacttcaggaatcaatcaatcaataaaatgccatctctaatctaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51495078 |
attaatttagaggaaaagagagggagagttttcaaatccattgccaagattgtacttcaggaatcaatc--------aaatgccatctctaatctaatct |
51494987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 262 - 450
Target Start/End: Complemental strand, 51494937 - 51494749
Alignment:
| Q |
262 |
ccaaagtttagttactagtagtggtaactggatatatttttccttctttttgacaaaagtagtaattgaatgttttattgctacaagtcaggcaagcaca |
361 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51494937 |
ccaaagtttagttactagcagtggtaactggatatatttttccttctttttgacaaacgtagtaattgaatgttttattgctacaagtcaagcaagcaca |
51494838 |
T |
|
| Q |
362 |
ttctcatcggtcacgggttaagtacattttcacaactcgagtcnnnnnnncatatggatcacagctcacactcataggtaccctatgct |
450 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51494837 |
ttctcatcagtcacgggtcaagtacattttcacaactcgagtctttttttcatatggatcacagctcacactcataggtaccgtatgct |
51494749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University