View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16536_low_5 (Length: 435)

Name: NF16536_low_5
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16536_low_5
NF16536_low_5
[»] chr4 (22 HSPs)
chr4 (18-433)||(24473895-24474327)
chr4 (171-304)||(24418243-24418376)
chr4 (171-302)||(52831396-52831527)
chr4 (18-98)||(24417765-24417845)
chr4 (173-239)||(31736148-31736214)
chr4 (173-245)||(21501615-21501687)
chr4 (343-393)||(24418452-24418502)
chr4 (174-245)||(17425685-17425756)
chr4 (171-243)||(3535168-3535240)
chr4 (170-218)||(47789506-47789554)
chr4 (185-296)||(23051682-23051793)
chr4 (175-294)||(39276304-39276423)
chr4 (171-208)||(20988818-20988855)
chr4 (171-204)||(41758556-41758589)
chr4 (261-305)||(49545253-49545297)
chr4 (174-245)||(13615223-13615294)
chr4 (182-228)||(33984181-33984227)
chr4 (170-240)||(41963388-41963458)
chr4 (173-238)||(20435432-20435496)
chr4 (171-208)||(44555710-44555747)
chr4 (179-267)||(2733399-2733486)
chr4 (186-218)||(17896025-17896057)
[»] chr8 (12 HSPs)
chr8 (170-303)||(28444779-28444912)
chr8 (173-304)||(41470025-41470156)
chr8 (179-242)||(13895970-13896033)
chr8 (171-225)||(37740624-37740678)
chr8 (174-242)||(32467773-32467840)
chr8 (171-220)||(29512807-29512855)
chr8 (173-245)||(27316671-27316743)
chr8 (174-241)||(24523835-24523902)
chr8 (178-220)||(2595231-2595273)
chr8 (261-303)||(40045409-40045451)
chr8 (262-307)||(2110860-2110905)
chr8 (273-305)||(10424395-10424427)
[»] chr3 (18 HSPs)
chr3 (173-290)||(43822481-43822598)
chr3 (175-303)||(37334435-37334563)
chr3 (171-305)||(37083785-37083919)
chr3 (170-303)||(32645686-32645818)
chr3 (171-233)||(20873203-20873265)
chr3 (171-241)||(32326151-32326221)
chr3 (174-239)||(44539130-44539195)
chr3 (174-245)||(9198195-9198266)
chr3 (171-228)||(32117833-32117890)
chr3 (174-220)||(38684772-38684818)
chr3 (173-242)||(32109516-32109585)
chr3 (173-238)||(36879053-36879118)
chr3 (175-239)||(31466013-31466077)
chr3 (171-225)||(11041987-11042041)
chr3 (182-228)||(12122841-12122887)
chr3 (178-207)||(3729754-3729783)
chr3 (171-207)||(1720149-1720185)
chr3 (171-207)||(10366555-10366591)
[»] chr1 (24 HSPs)
chr1 (174-302)||(32359123-32359251)
chr1 (174-305)||(7274584-7274715)
chr1 (174-304)||(21516661-21516791)
chr1 (171-303)||(32602739-32602871)
chr1 (174-245)||(20791972-20792043)
chr1 (174-305)||(42747545-42747676)
chr1 (170-305)||(37131508-37131645)
chr1 (169-220)||(20004000-20004051)
chr1 (174-245)||(35926674-35926745)
chr1 (171-304)||(31117733-31117868)
chr1 (171-245)||(22593644-22593719)
chr1 (175-245)||(1415734-1415804)
chr1 (175-208)||(11337365-11337398)
chr1 (175-208)||(11495384-11495417)
chr1 (185-245)||(35058589-35058649)
chr1 (176-228)||(46315642-46315694)
chr1 (171-206)||(5923771-5923806)
chr1 (170-245)||(5951848-5951923)
chr1 (173-239)||(35272623-35272689)
chr1 (176-217)||(15942491-15942532)
chr1 (171-207)||(2061031-2061067)
chr1 (174-242)||(7097744-7097811)
chr1 (261-305)||(10518166-10518210)
chr1 (182-230)||(47326544-47326592)
[»] chr5 (19 HSPs)
chr5 (170-304)||(9004761-9004894)
chr5 (177-305)||(34639941-34640069)
chr5 (171-295)||(16869950-16870074)
chr5 (171-242)||(1621554-1621625)
chr5 (174-241)||(6462402-6462469)
chr5 (174-303)||(32882661-32882790)
chr5 (174-220)||(13838879-13838925)
chr5 (171-296)||(28363381-28363506)
chr5 (171-218)||(31812082-31812129)
chr5 (261-303)||(11653825-11653867)
chr5 (172-220)||(14873307-14873355)
chr5 (170-217)||(34640063-34640110)
chr5 (170-204)||(13263447-13263481)
chr5 (174-220)||(17259474-17259520)
chr5 (171-224)||(15120895-15120948)
chr5 (174-207)||(34639821-34639854)
chr5 (171-220)||(41892908-41892957)
chr5 (176-228)||(16218262-16218314)
chr5 (171-207)||(29226403-29226439)
[»] chr2 (11 HSPs)
chr2 (170-304)||(40909852-40909986)
chr2 (174-244)||(31062943-31063013)
chr2 (170-304)||(44984337-44984471)
chr2 (171-306)||(42139322-42139456)
chr2 (174-245)||(27679071-27679142)
chr2 (174-296)||(44809871-44809992)
chr2 (185-242)||(12238594-12238651)
chr2 (171-208)||(15804440-15804477)
chr2 (179-241)||(44810061-44810123)
chr2 (180-228)||(38324331-38324379)
chr2 (171-207)||(42034452-42034488)
[»] scaffold0040 (1 HSPs)
scaffold0040 (170-245)||(49903-49978)
[»] chr7 (11 HSPs)
chr7 (178-239)||(25659447-25659508)
chr7 (170-245)||(883739-883814)
chr7 (170-245)||(1243068-1243143)
chr7 (170-238)||(28175587-28175655)
chr7 (186-242)||(44235513-44235569)
chr7 (181-245)||(3836938-3837002)
chr7 (173-208)||(29132510-29132545)
chr7 (171-208)||(13438443-13438480)
chr7 (186-231)||(18654709-18654754)
chr7 (170-223)||(42967762-42967815)
chr7 (261-305)||(12473589-12473633)
[»] scaffold0004 (1 HSPs)
scaffold0004 (169-209)||(339030-339070)
[»] chr6 (7 HSPs)
chr6 (175-292)||(3341057-3341174)
chr6 (180-245)||(1288301-1288366)
chr6 (181-238)||(16800436-16800493)
chr6 (181-242)||(17071804-17071865)
chr6 (180-225)||(17328732-17328777)
chr6 (261-305)||(6909534-6909578)
chr6 (185-245)||(9618505-9618565)
[»] scaffold0010 (1 HSPs)
scaffold0010 (171-245)||(166590-166662)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 24474327 - 24473895
Alignment:
Q  18 cttcttacatcccatcttaggctaattgaataaatttgaacttatgattgtcaatgtaaatgattttctatttttgttactttcatcttctctacaatta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24474327 cttcttacatcccatcttaggctaattgaataaatttgaacttatgattgtcaatgtaaatgattttctatttttgttactttcatcttctctacaatta 24474228  T
Q  118 ttttatgatgcactacattggttagagttacttgttcatttaggcttgtttggtgataagctataagctacttgaattagcttataaaaaaccactataa 217  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24474227 ttttatgatgcattacattggttagaattacttgttcatttaggcttgtttggtgataagctataagctacttgaattagcttataaaaaaccgctataa 24474128  T
Q  218 gctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtcttttttaatcatatgagcttataagctataagcttaccaagcagac 317  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24474127 actcatgaaaataagatataagcccgtgcaaagctgataattgccaaacaggtcttttttaatcatatgagcttataagctataagcttaccaagcagac 24474028  T
Q  318 acctagcaattattaacttatcctt-----------------gaaaaataaaatggtaggaaagcctccagttcatgatttaacggttaggtagcatcat 400  Q
    ||||||||||||||||||||| |||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24474027 acctagcaattattaacttattcttgatatttaaattgattagaaaaataaaatggtaggaaagcctccagttcatgatttaacggttaggtagcgtcat 24473928  T
Q  401 gagctcaaggctactaataatccctttgctact 433  Q
    |||||||||||||||||||||||| ||| ||||    
T  24473927 gagctcaaggctactaataatcccattgttact 24473895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 171 - 304
Target Start/End: Original strand, 24418243 - 24418376
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggt 270  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||| |||  ||| ||||  |||||||||    
T  24418243 tgataagctataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataagatataagcttgtgtaaaaatgacaattagcaaacaggt 24418342  T
Q  271 cttttttaatcatatgagcttataagctataagc 304  Q
    || ||||||||||||||||| ||||| |||||||    
T  24418343 ctcttttaatcatatgagctgataaggtataagc 24418376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 52831527 - 52831396
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggt 270  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||| || ||||||||| |||  |||   || ||||||| ||    
T  52831527 tgataagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaagctcgtgtaaaaatgaccgttaccaaacaagt 52831428  T
Q  271 cttttttaatcatatgagcttataagctataa 302  Q
     |||||||||||||||||||||||||||||||    
T  52831427 tttttttaatcatatgagcttataagctataa 52831396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 24417765 - 24417845
Alignment:
Q  18 cttcttacatcccatcttaggctaattgaataaatttgaacttatgattgtcaatgtaaatgattttctatttttgttact 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  24417765 cttcttacatcccatcttaggctacttgaataaatttgaacttatgtttgtcaatgtaactgattttatatttttgttact 24417845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 31736148 - 31736214
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataag 239  Q
    ||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||||| ||||||    
T  31736148 ataagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagttataag 31736214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 21501687 - 21501615
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| |||  | |||||||| ||||||||||||    
T  21501687 ataagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctataagctcgtg 21501615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 24418452 - 24418502
Alignment:
Q  343 gaaaaataaaatggtaggaaagcctccagttcatgatttaacggttaggta 393  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  24418452 gaaaaataaaatggtaggaaagcctcgagttcatgatttaacggtcaggta 24418502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 17425685 - 17425756
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||| ||||||||| ||||||||| || |||| ||||||||||| ||||||| | ||||||||||||    
T  17425685 taagctataggctacttgagttagcttattaataaccgctataagctcaagaaaatacgctataagctcgtg 17425756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 3535240 - 3535168
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcg 243  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||| |  | |||||||| ||||| ||||    
T  3535240 tgataagctataagctacttgaattagcttatcaaaaaacgctataagttagtaaaaataagctataaactcg 3535168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 47789506 - 47789554
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataag 218  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||    
T  47789506 gtgataagctataagctacttgaattagcttatcgaaaaccgctataag 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 23051682 - 23051793
Alignment:
Q  185 ctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtcttttttaatcata 284  Q
    |||||||||||||||||| | ||||| |||||| ||||| |||||||| | ||||||||||  ||  |||   || ||||||||||| |||||| ||| |    
T  23051682 ctacttgaattagcttatcacaaaccgctataaactcataaaaataagctgtaagctcgtgagaaagtgactgttaccaaacaggtcctttttagtcaaa 23051781  T
Q  285 tgagcttataag 296  Q
    || |||||||||    
T  23051782 tgggcttataag 23051793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 39276423 - 39276304
Alignment:
Q  175 aagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtcttt 274  Q
    ||||| |||||||||||||||||||||| ||||| |  ||||||||  | |||||||| ||||||||||||  ||  ||| | ||  |||||  ||| ||    
T  39276423 aagctttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagttatcaaacgagtcatt 39276324  T
Q  275 tttaatcatatgagcttata 294  Q
    |||| |||||||||||||||    
T  39276323 tttagtcatatgagcttata 39276304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 20988818 - 20988855
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaa 208  Q
    |||||||||||||||||||||||||||||||| |||||    
T  20988818 tgataagctataagctacttgaattagcttatcaaaaa 20988855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 41758589 - 41758556
Alignment:
Q  171 tgataagctataagctacttgaattagcttataa 204  Q
    ||||||||||||||||||||||||||||||||||    
T  41758589 tgataagctataagctacttgaattagcttataa 41758556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 49545297 - 49545253
Alignment:
Q  261 ccaaacaggtcttttttaatcatatgagcttataagctataagct 305  Q
    ||||||||| |||||||| || |||||||||||||||||||||||    
T  49545297 ccaaacagggcttttttagtcctatgagcttataagctataagct 49545253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 13615223 - 13615294
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||||||||||| |||||||||||  |||| ||| ||||  |||| |||||||| ||||| ||||||    
T  13615223 taagctataagctacttaaattagcttatcgaaaaacacaataatatcataaaaataaggtataaactcgtg 13615294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 33984227 - 33984181
Alignment:
Q  182 aagctacttgaattagcttataaaaaaccactataagctcatgaaaa 228  Q
    |||||||||||| |||||| | ||||| |||||||||||||||||||    
T  33984227 aagctacttgaaatagcttttcaaaaaacactataagctcatgaaaa 33984181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 41963388 - 41963458
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagc 240  Q
    ||||||||||||||| ||||||||||||||||| | ||| | ||||||| ||||  | ||||| |||||||    
T  41963388 gtgataagctataagttacttgaattagcttatcacaaatcgctataagttcatagatataagttataagc 41963458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 20435496 - 20435432
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataa 238  Q
    |||| ||||||||||||| ||||||||||| | |||| ||||||| ||||| |||||||| |||||    
T  20435496 ataaactataagctacttaaattagcttatcacaaactactataaactcat-aaaataagttataa 20435432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 44555710 - 44555747
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaa 208  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  44555710 tgataagctataagctacttggattagcttatcaaaaa 44555747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 2733399 - 2733486
Alignment:
Q  179 tataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaaca 267  Q
    |||||| ||||||||||||||||| ||||||   | ||||||||| |||||||| |||||||| ||| |||  ||| |||| |||||||    
T  2733399 tataagttacttgaattagcttatcaaaaactgat-taagctcattaaaataagttataagctggtgtaaaaatgacaattaccaaaca 2733486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 17896057 - 17896025
Alignment:
Q  186 tacttgaattagcttataaaaaaccactataag 218  Q
    ||||||||||||||||| |||||||||||||||    
T  17896057 tacttgaattagcttatcaaaaaccactataag 17896025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 28444779 - 28444912
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacagg 269  Q
    ||||||||||||||||||||| ||||||||||| |||| || || ||||||||| |||||||| ||||||||| || |||  ||| | || |||||||||    
T  28444779 gtgataagctataagctacttaaattagcttatcaaaaccctctctaagctcataaaaataagctataagctcttgtaaaaatgagagttaccaaacagg 28444878  T
Q  270 tcttttttaatcatatgagcttataagctataag 303  Q
    | ||||||||||||| ||||||||||||||||||    
T  28444879 tattttttaatcatacgagcttataagctataag 28444912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 304
Target Start/End: Complemental strand, 41470156 - 41470025
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtct 272  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||  | ||| |||| ||||||||||||  ||  ||| | || |||||| |||||    
T  41470156 ataagctataagctacttgagttagcttataaaaaaacactatgagctagtaaaattaagttataagctcgtgagaaaatgacagttaccaaacgggtct 41470057  T
Q  273 tttttaatcatatgagcttataagctataagc 304  Q
    |||||| | |||||||||||||||||||||||    
T  41470056 tttttagttatatgagcttataagctataagc 41470025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 13895970 - 13896033
Alignment:
Q  179 tataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    |||||| ||||||||||| ||||| |||||| ||||||| |||||||||||||| |||||||||    
T  13895970 tataagttacttgaattaacttatcaaaaacaactataaactcatgaaaataagttataagctc 13896033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 37740678 - 37740624
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatga 225  Q
    ||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||    
T  37740678 tgataagctataagctacttggattagcatatcaaaaaccgctataagctcatga 37740624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 32467773 - 32467840
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||||  | |||||||| |||||||||    
T  32467773 taagctataagctacttgaatt-gcttatcaaaaacgactataagctagtaaaaataagctataagctc 32467840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 29512855 - 29512807
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    ||||||||||||| ||||||||||||||||||| |||||| |||||||||    
T  29512855 tgataagctataatctacttgaattagcttata-aaaaccgctataagct 29512807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 27316671 - 27316743
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||||| |||||||||||| ||||  |||||   ||||||||| || |||||||||||||| ||||||    
T  27316671 ataagctataaactacttgaattaacttaccaaaaaatgctataagctaataaaaataagatataaactcgtg 27316743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 24523835 - 24523902
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagct 241  Q
    ||||||||||||||||||||| ||| ||| ||||||| || ||||||  | |||||||| ||||||||    
T  24523835 taagctataagctacttgaatcagcatatcaaaaacctctctaagctagtaaaaataagttataagct 24523902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 2595273 - 2595231
Alignment:
Q  178 ctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||    
T  2595273 ctatatgctacttgaattagcttatcaaaaaacactataagct 2595231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 40045451 - 40045409
Alignment:
Q  261 ccaaacaggtcttttttaatcatatgagcttataagctataag 303  Q
    ||||||||| |||||||| || |||||||||||||||||||||    
T  40045451 ccaaacagggcttttttagtcctatgagcttataagctataag 40045409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 2110905 - 2110860
Alignment:
Q  262 caaacaggtcttttttaatcatatgagcttataagctataagctta 307  Q
    |||||||||| || ||  ||||||||||||||||||||||||||||    
T  2110905 caaacaggtccttctttgtcatatgagcttataagctataagctta 2110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 10424427 - 10424395
Alignment:
Q  273 tttttaatcatatgagcttataagctataagct 305  Q
    |||||| ||||||||||||||||||||||||||    
T  10424427 tttttagtcatatgagcttataagctataagct 10424395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 43822598 - 43822481
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtct 272  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| |||  ||| |||| |||||| | |||    
T  43822598 ataagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaaataagctataagcttgtgtaaaaatgacaattaccaaacggatct 43822499  T
Q  273 tttttaatcatatgagct 290  Q
    ||||||||||||| ||||    
T  43822498 tttttaatcatataagct 43822481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 37334563 - 37334435
Alignment:
Q  175 aagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtcttt 274  Q
    |||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||  | ||||| |||||| |||  ||| | ||  ||||| |||||||    
T  37334563 aagctataagctacgtgagttagcttataataaaccattataagctcatgaaaatctgctataaactcgtgtaaaaatgacagttatcaaaccggtcttt 37334464  T
Q  275 tttaatcatatgagcttataagctataag 303  Q
    ||||||||||  |||||||||| ||||||    
T  37334463 tttaatcatacaagcttataagatataag 37334435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 37083919 - 37083785
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggt 270  Q
    |||||||||||||||||||||||||||||||| |||||   |||||||||  | |||||||| ||||||||||||  ||  ||| | || || |||  ||    
T  37083919 tgataagctataagctacttgaattagcttattaaaaattgctataagctagtaaaaataagctataagctcgtgagaaagtgacagttacctaacgtgt 37083820  T
Q  271 cttttttaatcatatgagcttataagctataagct 305  Q
    |||||||||||| |||||||||||||  |||||||    
T  37083819 cttttttaatcaaatgagcttataagacataagct 37083785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 303
Target Start/End: Complemental strand, 32645818 - 32645686
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacagg 269  Q
    |||||||||| |||||||||||| ||| ||||| |||| || |||||||||||| |||||||  |||||||||||| |||  ||| |||| | |||||      
T  32645818 gtgataagctttaagctacttgacttaacttatcaaaa-ccgctataagctcattaaaataaactataagctcgtgtaaaaatgacaattactaaacaac 32645720  T
Q  270 tcttttttaatcatatgagcttataagctataag 303  Q
    ||||||||||||| | |||||||||| |||||||    
T  32645719 tcttttttaatcacacgagcttataaactataag 32645686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 20873203 - 20873265
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataaga 233  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||  | |||||||||    
T  20873203 tgataagctataagttacttgaattagcttatcaaaaaccactataagctagtaaaaataaga 20873265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 32326151 - 32326221
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagct 241  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||  | |||||||| || |||||    
T  32326151 tgataagctataagctacttgaattagcttatcaaaaacctctataagctagtaaaaataagctacaagct 32326221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 44539195 - 44539130
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataag 239  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||    
T  44539195 taagttattagctacttgaattagcttatcaaaaaccactataagcttatgaaagtaagctataag 44539130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 9198195 - 9198266
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||  | |||||||| | ||||||||||    
T  9198195 taagctaaaagctacttgaattagcttatcaaaaaccgctataagctagtaaaaataagctttaagctcgtg 9198266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 32117890 - 32117833
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaa 228  Q
    ||||||||||| || ||||||||||||||||| ||||| | |||||||||||||||||    
T  32117890 tgataagctatcaggtacttgaattagcttatcaaaaaactctataagctcatgaaaa 32117833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 38684772 - 38684818
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||    
T  38684772 taagctataagctacttgaattagcttatcaaaaaacgctataagct 38684818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 32109585 - 32109516
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    |||||||||||||||||||||||||||||| |||||   || ||||||  | |||||||| |||||||||    
T  32109585 ataagctataagctacttgaattagcttatcaaaaattgctttaagcttttaaaaataagctataagctc 32109516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 36879053 - 36879118
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataa 238  Q
    ||||||| ||||||||||||||||||||||||||||   |||||||||  | |||||||| |||||    
T  36879053 ataagctctaagctacttgaattagcttataaaaaaatgctataagctagtaaaaataagttataa 36879118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 31466013 - 31466077
Alignment:
Q  175 aagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataag 239  Q
    ||||||||| ||||||||||||  |||| ||||| |||||||||||  | |||||||||||||||    
T  31466013 aagctataatctacttgaattaaattatcaaaaaacactataagctagtaaaaataagatataag 31466077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 11042041 - 11041987
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatga 225  Q
    ||||||||||||| ||||||||||||||||||  || | | ||||||||||||||    
T  11042041 tgataagctataaactacttgaattagcttatctaagaacgctataagctcatga 11041987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 12122841 - 12122887
Alignment:
Q  182 aagctacttgaattagcttataaaaaaccactataagctcatgaaaa 228  Q
    ||||||||||||||||||||| ||||| | ||||||||| |||||||    
T  12122841 aagctacttgaattagcttatcaaaaaacgctataagctaatgaaaa 12122887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 3729783 - 3729754
Alignment:
Q  178 ctataagctacttgaattagcttataaaaa 207  Q
    ||||||||||||||||||||||||||||||    
T  3729783 ctataagctacttgaattagcttataaaaa 3729754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 1720185 - 1720149
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaa 207  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  1720185 tgataagttataaactacttgaattagcttataaaaa 1720149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 10366555 - 10366591
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaa 207  Q
    ||||||||||||| | |||||||||||||||||||||    
T  10366555 tgataagctataaaccacttgaattagcttataaaaa 10366591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 32359251 - 32359123
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtctt 273  Q
    ||||||||| | ||||||||||||||||| ||||| | || |||||||||||||||||| |||||||||||| |||  ||| | |||| |||| | ||||    
T  32359251 taagctataggttacttgaattagcttatcaaaaatcgctgtaagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 32359152  T
Q  274 ttttaatcatatgagcttataagctataa 302  Q
    ||||||||||| |||||||||||||||||    
T  32359151 ttttaatcatacgagcttataagctataa 32359123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 7274715 - 7274584
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtctt 273  Q
    |||||||||| |||||||||||||||||| | |  ||||||| |||||||||||||||| |||||||||||  |||  ||||| ||   ||||| |||||    
T  7274715 taagctataaactacttgaattagcttatcagaggccactatgagctcatgaaaataagttataagctcgtttaaaaatgatagttatgaaacaagtctt 7274616  T
Q  274 ttttaatcatatgagcttataagctataagct 305  Q
    ||||||||||| ||||||||||||||| ||||    
T  7274615 ttttaatcatacgagcttataagctatgagct 7274584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 174 - 304
Target Start/End: Original strand, 21516661 - 21516791
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtctt 273  Q
    ||||||||||| ||||||| || |||||  ||||| | |||||||||||| ||| |||| |||||||||||| |||  ||| |||| ||||||| |||||    
T  21516661 taagctataagatacttgattttgcttaataaaaaacgctataagctcatcaaattaagttataagctcgtgaaaaaatgacaattaccaaacatgtctt 21516760  T
Q  274 ttttaatcatatgagcttataagctataagc 304  Q
    ||||| ||||| |||||||||||||||||||    
T  21516761 ttttagtcatacgagcttataagctataagc 21516791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 303
Target Start/End: Complemental strand, 32602871 - 32602739
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggt 270  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||| | |||||||||||  |||||||||||| ||| |||||| ||  ||||||  |    
T  32602871 tgataagctataagctatttgaattagcttatcaaatacctttataaacacatgaaaataaactataagctcgtgtaaaactgatagttagcaaacaaat 32602772  T
Q  271 cttttttaatcatatgagcttataagctataag 303  Q
    ||||||||||||||| | |||||||| ||||||    
T  32602771 cttttttaatcatataaacttataagttataag 32602739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 20791972 - 20792043
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||| |||| |||||    
T  20791972 taagctataagctacttgaattagcttatcaaaaaccactatgaactcataaaaataagatgtaaggtcgtg 20792043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 42747676 - 42747545
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtctt 273  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||| |||   |  ||| | || |  ||  |||||     
T  42747676 taagttataagttacttgaattagcttataaaaaaacactataagctcataaaattaagctataagcttgtgagtaaatgacagttacttaatgggtcta 42747577  T
Q  274 ttttaatcatatgagcttataagctataagct 305  Q
    ||||||||||| ||||||||||||||||||||    
T  42747576 ttttaatcatacgagcttataagctataagct 42747545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 305
Target Start/End: Original strand, 37131508 - 37131645
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacagg 269  Q
    ||||||||||||||||||||||||||||||||| |||| |   | |||| ||||||||||||| | ||||||||||  |   |||||  | |||||| ||    
T  37131508 gtgataagctataagctacttgaattagcttatcaaaagctgttgtaagttcatgaaaataaggtctaagctcgtgtgattatgatagctaccaaacggg 37131607  T
Q  270 tctttttt--aatcatatgagcttataagctataagct 305  Q
    ||||||||  ||||||| || |||||||||||| ||||    
T  37131608 tcttttttaaaatcatacgaacttataagctatgagct 37131645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 20004051 - 20004000
Alignment:
Q  169 ggtgataagctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  20004051 ggtgataagctataagctacttgaattagcttatcaaaaaacgctataagct 20004000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 35926674 - 35926745
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||||||||||||||| ||||||| ||||| ||||| |||||  | |||||||| ||||||||||||    
T  35926674 taagctataagctacttgaatcagcttatcaaaaaacactacaagctagtaaaaataagctataagctcgtg 35926745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 304
Target Start/End: Original strand, 31117733 - 31117868
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataag--atataagctcgtgcaaagctgataattgccaaacag 268  Q
    ||||| |||||||||||||||||||| ||||| |||||   |||||||||||| ||| ||||  |||| | || |||  ||  ||| |||| ||||||||    
T  31117733 tgataggctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagttatattaacttgtgagaaaatgacaattaccaaacag 31117832  T
Q  269 gtcttttttaatcatatgagcttataagctataagc 304  Q
    |||||||| | ||||| ||| |||||||| ||||||    
T  31117833 gtctttttcagtcatacgagattataagcaataagc 31117868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 22593644 - 22593719
Alignment:
Q  171 tgataagctataagctacttgaattagcttat-aaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||||||||||||||||||||||||||  ||||||  ||||||||| || |||||||| || | |||||||    
T  22593644 tgataagctataagctacttgaattagcttatcgaaaaactgctataagctgataaaaataagctacaggctcgtg 22593719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 1415804 - 1415734
Alignment:
Q  175 aagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    |||||| ||||||||||||||||||||| ||||| | ||||||  | || |||||||| ||||||||||||    
T  1415804 aagctacaagctacttgaattagcttatcaaaaaacgctataaattaataaaaataagctataagctcgtg 1415734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 11337365 - 11337398
Alignment:
Q  175 aagctataagctacttgaattagcttataaaaaa 208  Q
    ||||||||||||||||||||||||||||||||||    
T  11337365 aagctataagctacttgaattagcttataaaaaa 11337398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 11495384 - 11495417
Alignment:
Q  175 aagctataagctacttgaattagcttataaaaaa 208  Q
    ||||||||||||||||||||||||||||||||||    
T  11495384 aagctataagctacttgaattagcttataaaaaa 11495417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 35058649 - 35058589
Alignment:
Q  185 ctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    |||||||||||||||||  ||||||| |||||||| | | |||||||| ||||||||||||    
T  35058649 ctacttgaattagcttactaaaaaccgctataagcccgtaaaaataagctataagctcgtg 35058589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 46315642 - 46315694
Alignment:
Q  176 agctataagctacttgaattagcttataaaaaaccactataagctcatgaaaa 228  Q
    |||||||||||||||||| |||||||| ||||| |  ||||||||||||||||    
T  46315642 agctataagctacttgaaatagcttatcaaaaaacgttataagctcatgaaaa 46315694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 5923806 - 5923771
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaa 206  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5923806 tgataagctataagctacttgaaatagcttataaaa 5923771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 5951848 - 5951923
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    |||||||| |||||  || ||||||||||||||   ||||| |||||||||||| |||||||| |||||| |||||    
T  5951848 gtgataagttataaattatttgaattagcttatctcaaaccgctataagctcataaaaataagctataagatcgtg 5951923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 35272623 - 35272689
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataag 239  Q
    |||||| |||||||||| |||||||||||| ||||    |||||||||||| |||||||| ||||||    
T  35272623 ataagccataagctactggaattagcttatcaaaacaagctataagctcataaaaataagctataag 35272689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 15942491 - 15942532
Alignment:
Q  176 agctataagctacttgaattagcttataaaaaaccactataa 217  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  15942491 agctataagctacttgaattagcttatcaaaaaacacaataa 15942532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 2061031 - 2061067
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaa 207  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  2061031 tgataagctttaagctacttgaattagcttatcaaaa 2061067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 7097744 - 7097811
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    ||||||||||| ||||||||||||||||| |||||  |  |||||||||| |||||||  |||||||||    
T  7097744 taagctataagatacttgaattagcttattaaaaataatcataagctcat-aaaataacctataagctc 7097811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 10518210 - 10518166
Alignment:
Q  261 ccaaacaggtcttttttaatcatatgagcttataagctataagct 305  Q
    ||||||| ||||||| || |||| |||||||||||||||||||||    
T  10518210 ccaaacaagtcttttgtagtcatttgagcttataagctataagct 10518166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 47326544 - 47326592
Alignment:
Q  182 aagctacttgaattagcttataaaaaaccactataagctcatgaaaata 230  Q
    |||||||||||| |||||| | ||||| | |||||||||||||||||||    
T  47326544 aagctacttgaaatagcttttcaaaaaacgctataagctcatgaaaata 47326592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 170 - 304
Target Start/End: Complemental strand, 9004894 - 9004761
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacagg 269  Q
    ||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||| |||  || || |  |||||| |     
T  9004894 gtgattagctataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctataagctcgtgtaaa-atgttagtaaccaaacgga 9004796  T
Q  270 tcttttttaatcatatgagcttataagctataagc 304  Q
    | ||||||||||||| | |||||||||||||||||    
T  9004795 tattttttaatcatacgggcttataagctataagc 9004761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 34640069 - 34639941
Alignment:
Q  177 gctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtcttttt 276  Q
    ||||||| |||||||||||||||||| | ||||| ||||||||||||  ||||||| |||||||| ||| |||  | | | || |||||||||||||||     
T  34640069 gctataaactacttgaattagcttattataaaccgctataagctcatagaaataagctataagcttgtgtaaaattaacagttaccaaacaggtctttta 34639970  T
Q  277 taatcatatgagcttataagctataagct 305  Q
    | || |||  |||||||||||||||||||    
T  34639969 ttataataccagcttataagctataagct 34639941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 16869950 - 16870074
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggt 270  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||||||  | |||||||| |||||| |||||  ||  |||||  | ||||| ||||    
T  16869950 tgataagctataagctacttgaattagcttatcaaaaaacgctataagctagtaaaaataaggtataagttcgtgagaaagtgatagataccaaaaaggt 16870049  T
Q  271 cttttttaatcatatgagcttataa 295  Q
     ||||||| ||| ||||||| ||||    
T  16870050 attttttagtcaaatgagctaataa 16870074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 1621554 - 1621625
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    |||||||||||||||||||||||||||||||| ||||| | ||| |||| ||| |||||||| |||||||||    
T  1621554 tgataagctataagctacttgaattagcttatcaaaaaacgctaaaagcacataaaaataagctataagctc 1621625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 6462402 - 6462469
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagct 241  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||  | |||||||| ||||||||    
T  6462402 taagatataagctacttgaattagcttatcaaaaaccactataagctagtaaaaataagctataagct 6462469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 32882790 - 32882661
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtctt 273  Q
    |||||| ||||||||||||||||| |||| ||||| || ||||||||||  |||||||| ||||||||||||  ||  ||| |||| ||||||  ||||     
T  32882790 taagctttaagctacttgaattagtttatcaaaaaacattataagctcaaaaaaataagctataagctcgtgagaaaatgacaattaccaaacgagtctc 32882691  T
Q  274 ttttaatcatatgagcttataagctataag 303  Q
    ||||| ||| | || |||| ||||||||||    
T  32882690 ttttagtcagaagaacttaaaagctataag 32882661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 13838879 - 13838925
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    |||||||||||||||||||||||||| || |||||||||||||||||    
T  13838879 taagctataagctacttgaattagctaatcaaaaaccactataagct 13838925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 296
Target Start/End: Complemental strand, 28363506 - 28363381
Alignment:
Q  171 tgataagctataagctacttgaattagcttataa-aaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacagg 269  Q
    |||||||||||||||||||||| ||||||||||| |||| | |||||||| ||  |||||||| |||||||| |||  ||  |||   |||||||||| |    
T  28363506 tgataagctataagctacttgagttagcttataaaaaaaacgctataagc-cagtaaaataagctataagcttgtgagaaagtgacggttgccaaacaag 28363408  T
Q  270 tcttttttaatcatatgagcttataag 296  Q
    |||||| || ||| |||||||||||||    
T  28363407 tcttttatagtcaaatgagcttataag 28363381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 31812129 - 31812082
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataag 218  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  31812129 tgataagctatgagctacttgaattagcttatcaaaaaccgctataag 31812082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 11653825 - 11653867
Alignment:
Q  261 ccaaacaggtcttttttaatcatatgagcttataagctataag 303  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  11653825 ccaaacaggtcttttttaatcatacgagattataagctataag 11653867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 14873307 - 14873355
Alignment:
Q  172 gataagctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    ||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  14873307 gataagctataagctacttgaatttacttgtaaaaaaacactataagct 14873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 34640110 - 34640063
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataa 217  Q
    ||||||| ||||||||||||||||||||||||| | ||||| ||||||    
T  34640110 gtgataaactataagctacttgaattagcttattataaaccgctataa 34640063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 13263447 - 13263481
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataa 204  Q
    ||||||| |||||||||||||||||||||||||||    
T  13263447 gtgataaactataagctacttgaattagcttataa 13263481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 17259520 - 17259474
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    |||||||||| |||||||||||| ||||||||||| | |||||||||    
T  17259520 taagctataatctacttgaattaacttataaaaaaacgctataagct 17259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 15120895 - 15120948
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatg 224  Q
    |||||||||||||||||  ||| ||||||||| ||||| | |||||||||||||    
T  15120895 tgataagctataagctatgtgagttagcttatcaaaaaacgctataagctcatg 15120948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 34639854 - 34639821
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaa 207  Q
    ||||||||||||||||||||||||||||| ||||    
T  34639854 taagctataagctacttgaattagcttatcaaaa 34639821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 41892908 - 41892957
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagct 220  Q
    ||||||||| |||||||||||||||||||||| ||||  | |||||||||    
T  41892908 tgataagctgtaagctacttgaattagcttatcaaaacacgctataagct 41892957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 16218262 - 16218314
Alignment:
Q  176 agctataagctacttgaattagcttataaaaaaccactataagctcatgaaaa 228  Q
    |||||||||||| ||||| |||||| | ||||| | |||||||||||||||||    
T  16218262 agctataagctatttgaaatagcttttcaaaaaacgctataagctcatgaaaa 16218314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 29226403 - 29226439
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaa 207  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  29226403 tgataagttataagctacttgaactagcttataaaaa 29226439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 304
Target Start/End: Complemental strand, 40909986 - 40909852
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacagg 269  Q
    ||||||| |||||| |||||||||||||||||| ||||| |  |||||||||||||||||||| |||||||| ||    || ||| | || |||||| ||    
T  40909986 gtgataacctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagttataagcttgtcttcagatgacagttaccaaactgg 40909887  T
Q  270 tcttttttaatcatatgagcttataagctataagc 304  Q
    | |||||||||||||  ||||||||||||||||||    
T  40909886 tattttttaatcatacaagcttataagctataagc 40909852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 31063013 - 31062943
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgt 244  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||| |||||||||||    
T  31063013 taagctataagctacttgaaatagcttatcaaaaaccgctataagctcttgaaaataagttataagctcgt 31062943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 44984337 - 44984471
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacagg 269  Q
    ||||||| ||||||||||||||||||||||||| ||||| |  ||||||||| |||||||||| |||||||| ||    || ||| | || |||||| ||    
T  44984337 gtgataacctataagctacttgaattagcttatcaaaaaacgttataagctcgtgaaaataagttataagcttgtcttcagatgacagttaccaaactgg 44984436  T
Q  270 tcttttttaatcatatgagcttataagctataagc 304  Q
    | |||||||||||||  ||||||||||||| ||||    
T  44984437 tattttttaatcatacaagcttataagctacaagc 44984471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 306
Target Start/End: Complemental strand, 42139456 - 42139322
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggt 270  Q
    ||||||||||||| ||||||||||||||||  | |||||| ||||||||| || |||||||| |||||||| |||  ||  ||| |||| ||||||| ||    
T  42139456 tgataagctataatctacttgaattagcttg-acaaaaccgctataagctaataaaaataagctataagcttgtgagaaagtgacaattaccaaacatgt 42139358  T
Q  271 cttttttaatcatatgagcttataagctataagctt 306  Q
     ||||||| ||| |||||||||||||  ||||||||    
T  42139357 attttttagtcaaatgagcttataagacataagctt 42139322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 27679142 - 27679071
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||| ||||||||||||||||||||||| ||||| | |||||||||  | |||||||| ||||||||||||    
T  27679142 taagccataagctacttgaattagcttattaaaaaacgctataagctagtaaaaataagctataagctcgtg 27679071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 44809871 - 44809992
Alignment:
Q  174 taagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtctt 273  Q
    ||||| ||||||||||||||||||||||| | ||||| ||||||||| |  ||||| || ||||||||| || |||  |||  ||| |||||| || |||    
T  44809871 taagccataagctacttgaattagcttatcacaaaccgctataagctta-caaaattagctataagctcatgaaaaagtgaccattaccaaaccggcctt 44809969  T
Q  274 ttttaatcatatgagcttataag 296  Q
    ||||| ||| |||||||||||||    
T  44809970 ttttagtcaaatgagcttataag 44809992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 12238594 - 12238651
Alignment:
Q  185 ctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    ||||||||||||||||||  |||||| |||||| ||||||||||||||  ||||||||    
T  12238594 ctacttgaattagcttatcgaaaaccgctataaactcatgaaaataagccataagctc 12238651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 15804477 - 15804440
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaa 208  Q
    |||||||||||||||||||||||||||||||| |||||    
T  15804477 tgataagctataagctacttgaattagcttatcaaaaa 15804440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 44810123 - 44810061
Alignment:
Q  179 tataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagct 241  Q
    |||||||||||||||||||||||| ||||| | ||| |||||  | |||||||| ||||||||    
T  44810123 tataagctacttgaattagcttattaaaaaacgctaaaagctagtaaaaataagctataagct 44810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 38324379 - 38324331
Alignment:
Q  180 ataagctacttgaattagcttataaaaaaccactataagctcatgaaaa 228  Q
    |||||||||||||| |||||| | ||||| | |||||||||||||||||    
T  38324379 ataagctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 38324331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 42034488 - 42034452
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaa 207  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  42034488 tgataagctataatctacttgaattagcttatcaaaa 42034452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 49903 - 49978
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||| | |||||||| ||||||||||||    
T  49903 gtgataagctataagctacttgaattagcttatcacaaaccgctataagctcttaaaaataagctataagctcgtg 49978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 25659508 - 25659447
Alignment:
Q  178 ctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataag 239  Q
    |||||||||||||||||||||||||  ||||||| | |||||||||||||||||| ||||||    
T  25659508 ctataagctacttgaattagcttatcgaaaaccattgtaagctcatgaaaataagctataag 25659447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 883814 - 883739
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||| |||||| |||||||||||| ||||| | ||||  ||||| ||||||||||||||| ||||||||||||    
T  883814 gtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtg 883739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 1243143 - 1243068
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||| |||||| |||||||||||| ||||| | ||||  ||||| ||||||||||||||| ||||||||||||    
T  1243143 gtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtg 1243068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 28175587 - 28175655
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataa 238  Q
    ||||||||||||||||||||||| ||||||||| ||| |   |||||||||||| |||||||| |||||    
T  28175587 gtgataagctataagctacttgagttagcttatcaaagaaagctataagctcataaaaataagctataa 28175655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 44235513 - 44235569
Alignment:
Q  186 tacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||||| |||||||||    
T  44235513 tacttgaattaacttatcaaaaaacactataagctcattaaaataagctataagctc 44235569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 3837002 - 3836938
Alignment:
Q  181 taagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    |||||||||||||||||||||  ||||| | |||||||  |||||| ||||| ||||||||||||    
T  3837002 taagctacttgaattagcttaggaaaaaacgctataagaacatgaacataagctataagctcgtg 3836938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 29132545 - 29132510
Alignment:
Q  173 ataagctataagctacttgaattagcttataaaaaa 208  Q
    ||||||||||||||||||||||||||| ||||||||    
T  29132545 ataagctataagctacttgaattagctgataaaaaa 29132510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 13438443 - 13438480
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaa 208  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  13438443 tgataagctataagttacttgaattatcttataaaaaa 13438480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 18654709 - 18654754
Alignment:
Q  186 tacttgaattagcttataaaaaaccactataagctcatgaaaataa 231  Q
    ||||||||||||||||| | |||| ||||||||||||| |||||||    
T  18654709 tacttgaattagcttatcacaaacaactataagctcataaaaataa 18654754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 42967815 - 42967762
Alignment:
Q  170 gtgataagctataagctacttgaattagcttataaaaaaccactataagctcat 223  Q
    |||||||||| ||||||||||||||||||||||  |||| |  |||||||||||    
T  42967815 gtgataagctttaagctacttgaattagcttatcgaaaaacgttataagctcat 42967762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 12473589 - 12473633
Alignment:
Q  261 ccaaacaggtcttttttaatcatatgagcttataagctataagct 305  Q
    |||||| ||||||||||| ||| |||||||||||||| |||||||    
T  12473589 ccaaacgggtcttttttagtcaaatgagcttataagccataagct 12473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 339030 - 339070
Alignment:
Q  169 ggtgataagctataagctacttgaattagcttataaaaaac 209  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  339030 ggtgataagctataagctacttgaattagcttatcaaaaac 339070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 3341174 - 3341057
Alignment:
Q  175 aagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtgcaaagctgataattgccaaacaggtcttt 274  Q
    ||||||||| |||||| ||||||||||| | ||||| | ||||  |||| |||||||| ||||||||||||  ||  | || ||||||||||  |||||     
T  3341174 aagctataatctactttaattagcttatcacaaaccgccataatttcataaaaataagttataagctcgtgagaaaattattattgccaaacgagtctta 3341075  T
Q  275 tttaatcatatgagctta 292  Q
    |||| ||| |||||||||    
T  3341074 tttagtcaaatgagctta 3341057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 1288366 - 1288301
Alignment:
Q  180 ataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||| ||||||||||| ||||| ||||| || ||||||||||||| |||||| ||| | ||||||    
T  1288366 ataagatacttgaattaacttatcaaaaaacattataagctcatgagaataagctatgaactcgtg 1288301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 16800493 - 16800436
Alignment:
Q  181 taagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataa 238  Q
    |||||||||| ||||||||||| | |||||||||||| || || |||||||| |||||    
T  16800493 taagctacttcaattagcttatcacaaaccactataaacttataaaaataagctataa 16800436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 17071865 - 17071804
Alignment:
Q  181 taagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctc 242  Q
    |||||||||| ||||||||||| | ||||||||||||  | || |||||||| |||||||||    
T  17071865 taagctacttcaattagcttatcacaaaccactataaatttataaaaataagctataagctc 17071804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 17328732 - 17328777
Alignment:
Q  180 ataagctacttgaattagcttataaaaaaccactataagctcatga 225  Q
    |||||||||||||||||| |||| | ||||| ||||||||||||||    
T  17328732 ataagctacttgaattagtttatcacaaacccctataagctcatga 17328777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 6909578 - 6909534
Alignment:
Q  261 ccaaacaggtcttttttaatcatatgagcttataagctataagct 305  Q
    ||||||| |||||||||| || ||||| |||||||||||||||||    
T  6909578 ccaaacaagtcttttttagtcttatgaacttataagctataagct 6909534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 9618505 - 9618565
Alignment:
Q  185 ctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    ||||||||||||||||||||||||  ||||||||||  | |||| ||| ||||| ||||||    
T  9618505 ctacttgaattagcttataaaaaaatactataagcttgtaaaaacaagctataaactcgtg 9618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 166662 - 166590
Alignment:
Q  171 tgataagctataagctacttgaattagcttataaaaaaccactataagctcatgaaaataagatataagctcgtg 245  Q
    |||||||||||| |||||||| |||||||||| ||||  | |||||||||  | |||||||| ||||||||||||    
T  166662 tgataagctataggctacttggattagcttatcaaaa--cgctataagctagtaaaaataagttataagctcgtg 166590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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