View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16536_low_6 (Length: 435)
Name: NF16536_low_6
Description: NF16536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16536_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Complemental strand, 29253884 - 29253476
Alignment:
| Q |
9 |
tcgaagaatatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
108 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253884 |
tcgaacaaaatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
29253785 |
T |
|
| Q |
109 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253784 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtac |
29253685 |
T |
|
| Q |
209 |
attgttgttgggaatgaaataaatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaact |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29253684 |
attgttgttgggaatgaaataaatcctagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaatatttattcagcacttgcatctgccaact |
29253585 |
T |
|
| Q |
309 |
tgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccata |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253584 |
tgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccata |
29253485 |
T |
|
| Q |
409 |
tataacttc |
417 |
Q |
| |
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||||||||| |
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| T |
29253484 |
tataacttc |
29253476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 413
Target Start/End: Original strand, 29288033 - 29288415
Alignment:
| Q |
31 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
130 |
Q |
| |
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||||||||||||| |||||||||||||||| || || || |||||| ||| || ||||| |||||||||| ||||||||||||||||||||| |
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| T |
29288033 |
aatgagaatatatgatcctgatcaagcaaccttagaggctctaagaggctctaatatagaacttgttattggggtccgtaatgaagacattcaatcaatt |
29288132 |
T |
|
| Q |
131 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtacattgttgttgggaatgaaataa |
230 |
Q |
| |
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||| | | |||||||||| | |||||||||||||||||| |||||||||||| ||| || || || ||||||||||||||||||||||||||||||| |
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| T |
29288133 |
gcctatagtgtttcatcagctactaattgggtccaaaacaacatactaaaatactctcaagacgtaaagtttaggtacattgttgttgggaatgaaataa |
29288232 |
T |
|
| Q |
231 |
atcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagatttc |
330 |
Q |
| |
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|||| |||||||| |||||||| |||||||||| | ||||||||||||||||||| ||||||| |||||| |||| | ||||||||||||||| |||| |
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| T |
29288233 |
atcctagtaatgatgcaacatcaaaatttgttctacttgcaatgcagaacatttatacagcactagcatcttccaatctacaaaatcaaattaaggtttc |
29288332 |
T |
|
| Q |
331 |
aacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataa |
413 |
Q |
| |
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|||||||||| | ||| |||||| ||||| || |||||||||||| ||||| ||||||| |||| ||||| ||||||||| |
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| T |
29288333 |
aacagctatacaaatgaatttgttaggaagttcatatcctccatcacaaggagtatttagtccttcttcaatttcatatataa |
29288415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 29440745 - 29440636
Alignment:
| Q |
18 |
atattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaag |
116 |
Q |
| |
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|||||||| | ||| ||||||||| | ||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||||| |
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| T |
29440745 |
atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag |
29440646 |
T |
|
| Q |
117 |
acattcaatc |
126 |
Q |
| |
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|||||||||| |
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|
| T |
29440645 |
acattcaatc |
29440636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 29444392 - 29444283
Alignment:
| Q |
18 |
atattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaag |
116 |
Q |
| |
|
|||||||| | ||| ||||||||| | ||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||||| |
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|
| T |
29444392 |
atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag |
29444293 |
T |
|
| Q |
117 |
acattcaatc |
126 |
Q |
| |
|
|||||||||| |
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|
| T |
29444292 |
acattcaatc |
29444283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 13431577 - 13431643
Alignment:
| Q |
92 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
158 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| |
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|
| T |
13431577 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtatttcatcagcaactaatt |
13431643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 13303393 - 13303327
Alignment:
| Q |
92 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
158 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| | |||||||||||| ||||| |
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|
| T |
13303393 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtttttcatcagcaactaatt |
13303327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 390
Target Start/End: Complemental strand, 21287462 - 21287103
Alignment:
| Q |
31 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
130 |
Q |
| |
|
||||||||| ||| |||||||||||||||| || ||||| |||||| ||| | || ||||||||||| || ||||||||| ||||| ||||||| |
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|
| T |
21287462 |
aatgagaatttatgatcctgatcaagcaacattagaagctctaagaggttctaacatagaacttgtcattggagttcctaatgaaaacattgaatcaatt |
21287363 |
T |
|
| Q |
131 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccagg-tgttaattttaggtacattgttgttgggaatgaaata |
229 |
Q |
| |
|
|| || | |||||||||| | | |||||||||||||||||||| |||| ||| | | ||| ||| || ||||| |||||||||||||||||||||||| |
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|
| T |
21287362 |
gctaatagtgtttcatcagctacttattgggtccaaaacaatatattaaattactc-caaggatgtcaaatttagatacattgttgttgggaatgaaata |
21287264 |
T |
|
| Q |
230 |
aatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagattt |
329 |
Q |
| |
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|||| |||||||| ||||||||| ||||||||| | |||||| ||||||| || ||||||| |||||||||| || || ||||||| ||| ||| |
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| T |
21287263 |
gatcctagtaatgatccaacatcaacatttgttctaccagcaatgttgaacattaatgcagcactcacatctgccaatttacagcatcaaatcaaggttt |
21287164 |
T |
|
| Q |
330 |
caacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttag |
390 |
Q |
| |
|
|||| |||||| | ||| |||||||||||| || |||||||||||| |||| |||||||| |
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|
| T |
21287163 |
caactgctatacaaatgaatttgttgggaagttcctatcctccatcatcaggtgcatttag |
21287103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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