View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16537_high_4 (Length: 362)
Name: NF16537_high_4
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16537_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 52785866 - 52785535
Alignment:
| Q |
15 |
caaagggcaccaaaatatagttgcaactgcattatgttattgagatcaaataaatttgatacgatagtgagttcacaactcaaaaacctcttactttcaa |
114 |
Q |
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| T |
52785866 |
caaagggcaccaaaatatagttgcaactgcattatgttattgagatcaaataaatttgatacgatagtgagttcagaactcaaaagcctcttactttcca |
52785767 |
T |
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| Q |
115 |
ctttgcagatgcaaatagatcaataagactattgaaagcccctaaacacagaagaattgtaatcaacaagaacccaaagaagttgaaaataatgaagcat |
214 |
Q |
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| T |
52785766 |
ctttgcagatgcaaatagatcaataaggctgttgaaagcccctaaacacagaagaattgtaatcaacaagaacccaaagaagttgaaaataatgaagcat |
52785667 |
T |
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| Q |
215 |
tttgattttgatccatctatatattcatcaaatgcacaatcctctggtattagctctccattatctttgcctccttatgaatcactagctccaggaaaaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52785666 |
tttgattttgatccatctatatattcatcaaatgcacaaccctatggtattagctctccattatctttgcctccttatgaatcactagctccaggaaaaa |
52785567 |
T |
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| Q |
315 |
gccctccatattgtgtatacccaccaccaagt |
346 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52785566 |
gccctccatattgtgtatacccaccaccaagt |
52785535 |
T |
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