View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16537_high_9 (Length: 282)

Name: NF16537_high_9
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16537_high_9
NF16537_high_9
[»] chr5 (2 HSPs)
chr5 (1-174)||(36339309-36339482)
chr5 (42-133)||(22393767-22393858)
[»] chr4 (2 HSPs)
chr4 (68-144)||(34103016-34103092)
chr4 (92-144)||(41786827-41786879)
[»] chr7 (1 HSPs)
chr7 (54-146)||(21214072-21214164)
[»] chr1 (6 HSPs)
chr1 (54-146)||(18456822-18456914)
chr1 (51-118)||(15369664-15369731)
chr1 (92-146)||(18440728-18440782)
chr1 (92-146)||(18443611-18443665)
chr1 (92-146)||(18446498-18446552)
chr1 (92-146)||(18451587-18451641)
[»] chr2 (1 HSPs)
chr2 (68-143)||(22880445-22880520)
[»] chr8 (1 HSPs)
chr8 (92-142)||(39415274-39415324)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 36339482 - 36339309
Alignment:
Q  1 aagtaatactcgtaaaatatagggtggtaaaacgggcctaatcgtcgggtcggcccgtttagcctgctatttttgacggaatgggttaaacttttgaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  36339482 aagtaatactcgtaaaatatagggtggtaaaacgggcctaatcatcgggtcggcccgtttagcctgctattttttacgggctgggttaaacttttgaact 36339383  T
Q  101 cgctttatatagttggcttgctccgcttaactcattgaaaaaacagggttgggcgggccggaccacttaactcg 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  36339382 cgctttatatagttggcttgctccgcttaactcgttgaaaaaacagggcggggcgggccagaccacttaactcg 36339309  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 22393858 - 22393767
Alignment:
Q  42 tcgtcgggtcggcccgtttagcctgctatttttgacggaatgggttaaacttttgaactcgctttatatagttggcttgctccgcttaactc 133  Q
    |||||||| |||||||||||||| |||||||||| |||  || ||  || |||||||||||||||  | |||||| | || |||||||||||    
T  22393858 tcgtcgggccggcccgtttagcccgctatttttggcgggctgagtcgaagttttgaactcgcttttcaaagttggttcgccccgcttaactc 22393767  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 34103016 - 34103092
Alignment:
Q  68 tatttttgacggaatgggttaaacttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaac 144  Q
    |||||||| |||| || || ||| |||| |||||||||| ||||||||||| |||||||||||||  ||||||||||    
T  34103016 tatttttggcggactgagtcaaagttttaaactcgctttttatagttggctcgctccgcttaacttgttgaaaaaac 34103092  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 41786827 - 41786879
Alignment:
Q  92 ttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaac 144  Q
    ||||||||||||||| ||||||||||| |  ||||||||||| || |||||||    
T  41786827 ttttgaactcgctttctatagttggctagtcccgcttaactcgttaaaaaaac 41786879  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 21214164 - 21214072
Alignment:
Q  54 cccgtttagcctgctatttttgacggaatgggttaaacttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaacag 146  Q
    |||||||||||  |||||||||| ||| || ||  || ||||||||||||||  |||| |||||| || ||| |||||| |||||||||||||    
T  21214164 cccgtttagcccactatttttgatggactgagtcgaagttttgaactcgcttcctataattggctcgccccgtttaacttattgaaaaaacag 21214072  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 18456914 - 18456822
Alignment:
Q  54 cccgtttagcctgctatttttgacggaatgggttaaacttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaacag 146  Q
    ||||||||||| ||||||||||||||  || ||  || ||||||| |||||| |||||||||| | || || |||||||  ||||||||||||    
T  18456914 cccgtttagccggctatttttgacgggttgagtcgaagttttgaattcgcttcatatagttgggtcgccccacttaacttgttgaaaaaacag 18456822  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 15369731 - 15369664
Alignment:
Q  51 cggcccgtttagcctgctatttttgacggaatgggttaaacttttgaactcgctttatatagttggct 118  Q
    |||||||||| |||||||||||||| |||  || ||  || ||||||||||||||| |||||||||||    
T  15369731 cggcccgtttggcctgctatttttggcgggctgagtcgaagttttgaactcgctttctatagttggct 15369664  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 18440782 - 18440728
Alignment:
Q  92 ttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaacag 146  Q
    |||||||||||||| |||||||||||| || ||| ||||||  ||||||||||||    
T  18440782 ttttgaactcgcttcatatagttggctcgccccgtttaacttgttgaaaaaacag 18440728  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 18443665 - 18443611
Alignment:
Q  92 ttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaacag 146  Q
    |||||||||||||| |||||||||||| || ||| ||||||  ||||||||||||    
T  18443665 ttttgaactcgcttcatatagttggctcgccccgtttaacttgttgaaaaaacag 18443611  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 18446552 - 18446498
Alignment:
Q  92 ttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaacag 146  Q
    |||||||||||||| |||||||||||| || ||| ||||||  ||||||||||||    
T  18446552 ttttgaactcgcttcatatagttggctcgccccgtttaacttgttgaaaaaacag 18446498  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 18451641 - 18451587
Alignment:
Q  92 ttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaacag 146  Q
    |||||||||||||| |||||||||||| || ||| ||||||  ||||||||||||    
T  18451641 ttttgaactcgcttcatatagttggctcgccccgtttaacttgttgaaaaaacag 18451587  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 22880445 - 22880520
Alignment:
Q  68 tatttttgacggaatgggttaaacttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaaa 143  Q
    ||||||||||||| || ||| || |||||||||| |||| ||||||||| | |   ||||||||||||||||||||    
T  22880445 tatttttgacggattgagttgaagttttgaactcactttttatagttggttcgtctcgcttaactcattgaaaaaa 22880520  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 39415274 - 39415324
Alignment:
Q  92 ttttgaactcgctttatatagttggcttgctccgcttaactcattgaaaaa 142  Q
    ||||||||||||||  |||||||||||||| ||||||||||| | ||||||    
T  39415274 ttttgaactcgcttcctatagttggcttgccccgcttaactcgtcgaaaaa 39415324  T

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