View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16537_low_10 (Length: 300)
Name: NF16537_low_10
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16537_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 75 - 300
Target Start/End: Original strand, 36892390 - 36892615
Alignment:
| Q |
75 |
atgattgtctgaaatttaggaagtaaacgataccattatgtacctggttaacagttgaaaaactataaacctacccaaacgcgaatttgcaacttgaaac |
174 |
Q |
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| T |
36892390 |
atgattgtctgaaatttaggaagtaaacgataccattatgtacctggttaacagttgaaaaactataaacctacccaaacgtgaatttgcaacttgaaac |
36892489 |
T |
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| Q |
175 |
caaacatatctaaattcttttggaaagaaatagcttggaaagcataccttaaaaagtattgccttaactgccgtacattatatccaaccccgacatcttt |
274 |
Q |
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| T |
36892490 |
caaacatatctaaattcttttggaaagaattagcttggaaagcataccttaaaaagtattgccttaactgccgtacattatatccaaccccgacatcttt |
36892589 |
T |
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| Q |
275 |
gctatacaggcgtggattccacatga |
300 |
Q |
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| T |
36892590 |
gctatacaggcgtggattccacatga |
36892615 |
T |
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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 35262815 - 35262756
Alignment:
| Q |
32 |
catcatcatcaacataagaggatctagaagaactgtcatcatcatgattgtctgaaattt |
91 |
Q |
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| T |
35262815 |
catcatcatcaacataagaggagctagaagaactgtcatcatcatgattgtctgaaattt |
35262756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 16992479 - 16992542
Alignment:
| Q |
26 |
catcagcatcatcatcaacataagaggatctagaagaactgtcatcatcatgattgtctgaaat |
89 |
Q |
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| T |
16992479 |
catcatcatcatcattaacataagaggagcttgaagaacagtcatcgtcatcattgtctgaaat |
16992542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 16824311 - 16824354
Alignment:
| Q |
32 |
catcatcatcaacataagaggatctagaagaactgtcatcatca |
75 |
Q |
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| T |
16824311 |
catcatcatcaacagaagaggatccagaagaactttcatcatca |
16824354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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