View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16537_low_13 (Length: 265)
Name: NF16537_low_13
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16537_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 49115279 - 49115516
Alignment:
| Q |
19 |
gttgtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgca |
118 |
Q |
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| T |
49115279 |
gttgtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgca |
49115378 |
T |
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| Q |
119 |
gtgatggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcacctatataaaacaatatatactttttgtcacaaaca |
218 |
Q |
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| T |
49115379 |
gtgatggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcacctatataaaacaatatatactttttgtcacaaaca |
49115478 |
T |
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| Q |
219 |
tagctatccatgtatgtttctgttagatacagtataat |
256 |
Q |
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| T |
49115479 |
tagctatccatgtatgtttctgttagatacagtgtaat |
49115516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 49103228 - 49103428
Alignment:
| Q |
26 |
aaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcagtgatgg |
125 |
Q |
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| T |
49103228 |
aaccaagtatcacgagttattttcaaggatttgaaacaatattgtgtctcatatgtgtcttgactcttttcaaatgcttcaaagaattccttagtgatag |
49103327 |
T |
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| Q |
126 |
ggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcacct--atataaaacaatatatacttttt-gtcacaaacatagc |
222 |
Q |
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| T |
49103328 |
ggattgtgtttgatgcatcaataggaacaagggtgataggaagtccagaatgaatcacctacatataaaacgatgtttactttttggtcacaaacatagc |
49103427 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
49103428 |
t |
49103428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 6956816 - 6956650
Alignment:
| Q |
20 |
ttgtcgaaccaagtatcacgagatattttcaaggatttgaaacagtattgtgcttcatgtgtgtcttgactcttttcaaatgcatcaaagaattgtgcag |
119 |
Q |
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||||| |||||||||||| ||| ||||||||||| ||||||||||||||||| || | |||||||||||||||||||||| |||||||||||| | || |
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| T |
6956816 |
ttgtcaaaccaagtatcatgagccattttcaaggacttgaaacagtattgtgcctcgtatgtgtcttgactcttttcaaattcatcaaagaattcttcac |
6956717 |
T |
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| Q |
120 |
tgatggggattgtgtttgatgcatcaagaggaactagggtgactggaattccagaatgaatcaccta |
186 |
Q |
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| T |
6956716 |
ttatggggattgtgtttgttgcatcaagaggaacaagggtaataggaataccagaatgaatcaccta |
6956650 |
T |
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