View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16537_low_2 (Length: 449)
Name: NF16537_low_2
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16537_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 26956051 - 26955622
Alignment:
| Q |
13 |
aaaatgggtggtccaactccaaataagttaagagctgaaaaaagtatatattgttcaatatgcttttggactaatggatcttacaaatgaactaagaaat |
112 |
Q |
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| T |
26956051 |
aaaatgggtggtccaactccaaataagttaagagctgaaaaaagtatatattgttcaatatgcttttggactaatggatcttacaaatgaactaagaaat |
26955952 |
T |
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| Q |
113 |
ggaaaacttaggatcttaagaatatccatttcc-------tccaattttctagtttggcagtaacatgtggagctggtcaggggatcaggttaccacaga |
205 |
Q |
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| T |
26955951 |
ggaaaacttaggatcttaagaatatccatttcccatttcctccaattttctagtttggcagtaacatgtggtgctggtcaggggatcaggttaccacaga |
26955852 |
T |
|
| Q |
206 |
gagatttcatggtccttgttgttttgcttggctacttgtctgtttggcttttgctaacaaattgaatgaaccaaaaaatttgtatggatcgagattattc |
305 |
Q |
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| T |
26955851 |
gagatttcatggtccttgttgttttgcttggctacttgtctgtttggcttttgctaacaaattgaatgaaccaaaaattttgtatggatcaagattattc |
26955752 |
T |
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| Q |
306 |
cttgtatgggaatttatgtacgatgtttctgtggttgcaaacttgatgtttgtcccttactagtactactgatgtcgacattggtggttagtactacttg |
405 |
Q |
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| T |
26955751 |
cttgtatgggaatttatgtacgatgtttctgtggttgcaaacttgatgtttgtcccttactagtactactgatgtcgacattggtggttagtactacttg |
26955652 |
T |
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| Q |
406 |
atttttgccccttgttactagtgcttgttg |
435 |
Q |
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| T |
26955651 |
atttttgccccttgttactagttcttgttg |
26955622 |
T |
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