View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16537_low_3 (Length: 429)

Name: NF16537_low_3
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16537_low_3
NF16537_low_3
[»] chr5 (7 HSPs)
chr5 (8-411)||(36338338-36338737)
chr5 (352-411)||(36346106-36346165)
chr5 (249-300)||(36307116-36307167)
chr5 (352-411)||(36309834-36309893)
chr5 (249-293)||(36346214-36346258)
chr5 (255-290)||(36309940-36309975)
chr5 (258-301)||(36324550-36324593)
[»] chr1 (6 HSPs)
chr1 (9-87)||(42377829-42377905)
chr1 (9-66)||(18440422-18440479)
chr1 (9-66)||(18443305-18443362)
chr1 (9-66)||(18446192-18446249)
chr1 (9-66)||(18451281-18451338)
chr1 (9-64)||(18456520-18456575)
[»] chr8 (2 HSPs)
chr8 (9-70)||(39415569-39415630)
chr8 (9-70)||(15199003-15199065)
[»] scaffold0754 (1 HSPs)
scaffold0754 (9-66)||(1021-1078)
[»] chr6 (1 HSPs)
chr6 (28-81)||(11350844-11350897)
[»] chr2 (1 HSPs)
chr2 (9-66)||(32647228-32647286)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 411
Target Start/End: Complemental strand, 36338737 - 36338338
Alignment:
Q  8 gtgataaaagcaactcagtttttt-gttataattaagttgtaaaataatgcattaaaaaaagttttagttttttcctctaannnnnnnnnnngtttgaca 106  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||           ||||||||    
T  36338737 gtgataaaagcaacttagtttttttgttacaattaagttgtaaaaaaatgcattaaaaaaagttgtagttttttcctctaatttttttttt-gtttgaca 36338639  T
Q  107 gaccggcccgccaactcgtatttccaccactaaactgggctgggtgaattttggactcgatcgcctaatt-gactcgtctcgtctcatcccattttgatc 205  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||| ||||||||    
T  36338638 gaccggtccgccaactcgtatgtccaccactaaactgggctgggtgaattttagactcgaccgcctaatttgaatcgtctcgtctcatcccgttttgatc 36338539  T
Q  206 agacttatgcggtacgagcctaaacgggacgggaccgtccactttgttaatgaccaattatcctcgcaattacttaacaaaatattatgttctatannnn 305  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        
T  36338538 agacttatgcgggacgagcctaaacgggacgggaccgtccactttgttaatgaccaattatcctcgcaattacttaacaaaatattatattctata---- 36338443  T
Q  306 nnnnnnnnnatc-aagaatcaagatatattatcnnnnnnnnnnnggctgtacaatgtattctatctaataatgttctttttggtcctcttatatttagtg 404  Q
             ||| ||||||||||||||||||||            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36338442 tttttttttatcaaagaatcaagatatattatctttttttttt--gctgtacaatgtactctatctaataatgttctttttggtcctcttatatttagtg 36338345  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 36346165 - 36346106
Alignment:
Q  352 tgtacaatgtattctatctaataatgttctttttggtcctcttatatttagtgtctcatg 411  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  36346165 tgtacaatgtattttatctaatcatgttctttttggtcctcttatatttattgtctcatg 36346106  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 36307167 - 36307116
Alignment:
Q  249 ttgttaatgaccaattatcctcgcaattacttaacaaaatattatgttctat 300  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  36307167 ttgttgatgaccaattatcctcgcaattagttaacaaaatattatcttctat 36307116  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 36309893 - 36309834
Alignment:
Q  352 tgtacaatgtattctatctaataatgttctttttggtcctcttatatttagtgtctcatg 411  Q
    ||||||||||||| |||||||| |||||| ||||| |||||||||| |||| ||||||||    
T  36309893 tgtacaatgtattttatctaattatgttccttttgatcctcttatagttagcgtctcatg 36309834  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 36346258 - 36346214
Alignment:
Q  249 ttgttaatgaccaattatcctcgcaattacttaacaaaatattat 293  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||    
T  36346258 ttgttgatgaccatttatcctcgcaattagttaacaaaatattat 36346214  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 36309975 - 36309940
Alignment:
Q  255 atgaccaattatcctcgcaattacttaacaaaatat 290  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36309975 atgaccaattatcctcgcaattagttaacaaaatat 36309940  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 36324593 - 36324550
Alignment:
Q  258 accaattatcctcgcaattacttaacaaaatattatgttctata 301  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||    
T  36324593 accaattatccttgcaattagttaacaaaatattatattctata 36324550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 42377905 - 42377829
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaaaaagttttagttttttcctctaa 87  Q
    |||||||||||||  |||||||||| | ||||| ||||||||| ||||||||||||||||||||  |||||||||||||    
T  42377905 tgataaaagcaacatagttttttgtaacaattatgttgtaaaaaaatgcattaaaaaaagtttt--ttttttcctctaa 42377829  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18440479 - 18440422
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaaaa 66  Q
    |||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||||    
T  18440479 tgataaaagcaacttagttttttgttacagttaagttgtaaaaaaatgcattaaaaaa 18440422  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18443362 - 18443305
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaaaa 66  Q
    |||||||||||||| |||||||||||| | |||| |||||||| ||||||||||||||    
T  18443362 tgataaaagcaacttagttttttgttacagttaacttgtaaaaaaatgcattaaaaaa 18443305  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18446249 - 18446192
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaaaa 66  Q
    |||||||||||||| |||||||||||| | |||| |||||||| ||||||||||||||    
T  18446249 tgataaaagcaacttagttttttgttacagttaacttgtaaaaaaatgcattaaaaaa 18446192  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18451338 - 18451281
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaaaa 66  Q
    |||||||||||||| |||||||||||| | |||| |||||||| ||||||||||||||    
T  18451338 tgataaaagcaacttagttttttgttacagttaacttgtaaaaaaatgcattaaaaaa 18451281  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 18456575 - 18456520
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaa 64  Q
    |||||||||||||| |||||||||||| | |||| |||||||| ||||||||||||    
T  18456575 tgataaaagcaacttagttttttgttacagttaacttgtaaaaaaatgcattaaaa 18456520  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 39415569 - 39415630
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaaaaagtt 70  Q
    ||||||||||||| ||||||||||| | ||||| ||||||||| ||||||||||||||||||    
T  39415569 tgataaaagcaacacagttttttgtaacaattatgttgtaaaaaaatgcattaaaaaaagtt 39415630  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 15199003 - 15199065
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgt-aaaataatgcattaaaaaaagtt 70  Q
    |||| ||||||||  |||||||||||| ||||||||||| |||| |||||||| |||||||||    
T  15199003 tgattaaagcaacaaagttttttgttacaattaagttgtaaaaaaaatgcattcaaaaaagtt 15199065  T

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Target: scaffold0754 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 1078 - 1021
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgtaaaataatgcattaaaaaa 66  Q
    |||||||||||||| |||||||||||| | |||| |||||||| ||||||||||||||    
T  1078 tgataaaagcaacttagttttttgttacagttaacttgtaaaaaaatgcattaaaaaa 1021  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 11350844 - 11350897
Alignment:
Q  28 ttttgttataattaagttgtaaaataatgcattaaaaaaagttttagttttttc 81  Q
    |||||||||||||||||||||||| |||||||||||||| ||| | ||||||||    
T  11350844 ttttgttataattaagttgtaaaaaaatgcattaaaaaatgttgttgttttttc 11350897  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 32647286 - 32647228
Alignment:
Q  9 tgataaaagcaactcagttttttgttataattaagttgt-aaaataatgcattaaaaaa 66  Q
    |||||||||||||  |||||||||| | ||||||||||| |||| ||||||||||||||    
T  32647286 tgataaaagcaacatagttttttgtaacaattaagttgtaaaaaaaatgcattaaaaaa 32647228  T

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