View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16537_low_4 (Length: 404)

Name: NF16537_low_4
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16537_low_4
NF16537_low_4
[»] chr8 (3 HSPs)
chr8 (112-267)||(44269021-44269176)
chr8 (29-118)||(44268904-44268994)
chr8 (214-266)||(37263356-37263408)
[»] chr1 (2 HSPs)
chr1 (215-264)||(18216685-18216734)
chr1 (219-265)||(7060630-7060676)
[»] chr4 (1 HSPs)
chr4 (215-263)||(34771271-34771319)
[»] chr6 (1 HSPs)
chr6 (216-271)||(5003089-5003144)
[»] chr3 (3 HSPs)
chr3 (216-267)||(33329611-33329662)
chr3 (214-255)||(28712736-28712777)
chr3 (215-267)||(28204479-28204531)
[»] chr2 (1 HSPs)
chr2 (216-271)||(37803391-37803446)
[»] chr7 (1 HSPs)
chr7 (213-265)||(18504504-18504556)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 44269021 - 44269176
Alignment:
Q  112 tagaccaattctagttctccacaccacctccataccgactccacatgggaagtgtaagcaaaaatcaaaacaaagcaaagacaattctcactgaattatt 211  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44269021 tagaccaattctacttttccacaccacctccataccgactccacatgggaagtgtaagcaaaattcaaaacaaagcaaagacaattctcactgaattatt 44269120  T
Q  212 caaaggcttaataacagttttcgccctttaacttttatgaagttacaattttgacc 267  Q
    |||||| ||||||||||||||    |  ||||||||||||||||||||||||||||    
T  44269121 caaaggattaataacagttttttttccctaacttttatgaagttacaattttgacc 44269176  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 44268904 - 44268994
Alignment:
Q  29 tttaccaacaacaaaa-aatcgtaaaaagaagtagaagtacacaactaattacagtaatttgagtttacccctaattaaattgttagacca 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44268904 tttaccaacaacaaaaaaatcgtaaaaagaagtagaagtacacaactaattacagtaatttgagtttacccctaattaaattgttagacca 44268994  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 37263356 - 37263408
Alignment:
Q  214 aaggcttaataacagttttcgccctttaacttttatgaagttacaattttgac 266  Q
    |||| |||||| |||||||||||| |||||||||| |||||| | ||||||||    
T  37263356 aaggtttaatagcagttttcgccccttaacttttacgaagttgcgattttgac 37263408  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 18216685 - 18216734
Alignment:
Q  215 aggcttaataacagttttcgccctttaacttttatgaagttacaattttg 264  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18216685 aggcttaataacagttttcgccctctaacttttatgaagttacaattttg 18216734  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 7060630 - 7060676
Alignment:
Q  219 ttaataacagttttcgccctttaacttttatgaagttacaattttga 265  Q
    |||||| |||||||||| ||||||||||||||||||| | |||||||    
T  7060630 ttaatagcagttttcgctctttaacttttatgaagttgcgattttga 7060676  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 34771271 - 34771319
Alignment:
Q  215 aggcttaataacagttttcgccctttaacttttatgaagttacaatttt 263  Q
    |||||||||||||||||||||||| ||||||| |  |||||||||||||    
T  34771271 aggcttaataacagttttcgccctctaactttcacaaagttacaatttt 34771319  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 5003089 - 5003144
Alignment:
Q  216 ggcttaataacagttttcgccctttaacttttatgaagttacaattttgacctcct 271  Q
    ||||||||||||||||||||||  ||||||||| |||||| | |||||||| ||||    
T  5003089 ggcttaataacagttttcgccccctaacttttaagaagttgcgattttgacttcct 5003144  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 33329611 - 33329662
Alignment:
Q  216 ggcttaataacagttttcgccctttaacttttatgaagttacaattttgacc 267  Q
    ||||||||| ||||||||||||| ||||||||| |||||| | |||||||||    
T  33329611 ggcttaatagcagttttcgccctctaacttttacgaagttgcgattttgacc 33329662  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 28712777 - 28712736
Alignment:
Q  214 aaggcttaataacagttttcgccctttaacttttatgaagtt 255  Q
    ||||||||||| ||||||||||||  ||||||||||||||||    
T  28712777 aaggcttaatagcagttttcgccccctaacttttatgaagtt 28712736  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 28204479 - 28204531
Alignment:
Q  215 aggcttaataacagttttcgccctttaacttttatgaagttacaattttgacc 267  Q
    |||||||||| |||||||||||| |||||||| | |||||| | |||||||||    
T  28204479 aggcttaatagcagttttcgccccttaactttcacgaagttgcgattttgacc 28204531  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 37803446 - 37803391
Alignment:
Q  216 ggcttaataacagttttcgccctttaacttttatgaagttacaattttgacctcct 271  Q
    |||||||||||| |||||||||  ||||||||| |||||| | |||||||||||||    
T  37803446 ggcttaataacaattttcgccccctaacttttacgaagttgcgattttgacctcct 37803391  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 18504556 - 18504504
Alignment:
Q  213 aaaggcttaataacagttttcgccctttaacttttatgaagttacaattttga 265  Q
    |||||||||||||||||||||| ||  ||||||| |||||||| | |||||||    
T  18504556 aaaggcttaataacagttttcgtcccctaactttcatgaagttgcgattttga 18504504  T

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