View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16537_low_7 (Length: 333)

Name: NF16537_low_7
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16537_low_7
NF16537_low_7
[»] chr7 (8 HSPs)
chr7 (20-121)||(25089560-25089661)
chr7 (21-96)||(18228911-18228988)
chr7 (97-199)||(31730692-31730794)
chr7 (126-200)||(31893751-31893825)
chr7 (167-261)||(12345569-12345659)
chr7 (113-232)||(10930834-10930953)
chr7 (41-95)||(32917168-32917224)
chr7 (186-276)||(13608571-13608661)
[»] chr1 (1 HSPs)
chr1 (96-279)||(34003154-34003337)
[»] chr2 (2 HSPs)
chr2 (165-330)||(15424529-15424693)
chr2 (144-201)||(14913452-14913509)
[»] chr8 (4 HSPs)
chr8 (96-206)||(14189564-14189674)
chr8 (93-216)||(16496012-16496136)
chr8 (179-261)||(38728598-38728680)
chr8 (97-206)||(12503301-12503410)
[»] chr3 (3 HSPs)
chr3 (111-280)||(51811087-51811254)
chr3 (37-96)||(33605823-33605884)
chr3 (96-201)||(7255023-7255127)
[»] chr5 (2 HSPs)
chr5 (165-201)||(24211555-24211591)
chr5 (97-206)||(20928633-20928741)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 25089560 - 25089661
Alignment:
Q  20 gacaacaacaaaagttgagtgacaaaactcaaactttgaagagggttgagcccaaaagtgaaaatcaaaagctaaatgaaaattgttcttttcccatcaa 119  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25089560 gacaacaacaaaagccgagtgacaaaactcaaactttgaagagggttgagcccaaaagtgaaaatcaaaagctaaatgaaaattgttcttttcccatcaa 25089659  T
Q  120 aa 121  Q
    ||    
T  25089660 aa 25089661  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 18228911 - 18228988
Alignment:
Q  21 acaacaacaaaagttgagtgacaaaactcaaactttgaagagggttgagc--ccaaaagtgaaaatcaaaagctaaat 96  Q
    |||| ||||||||||   |||||||||||||| |||||||||||||||||  |||||||| |||||||||||||||||    
T  18228911 acaagaacaaaagttagatgacaaaactcaaattttgaagagggttgagccaccaaaagttaaaatcaaaagctaaat 18228988  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 31730692 - 31730794
Alignment:
Q  97 gaaaattgttcttttcccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgagt 196  Q
    |||||||| |||| |||||| |||||| ||||||||||| ||||| ||||||||||| |   || ||  | ||||||||||||||||||||||| |||||    
T  31730692 gaaaattgctcttctcccataaaaaaatactcactcccaattgaatagacgaaagtaccttcgtatgagtgaagtcacgctcggtactttcagcgtgagt 31730791  T
Q  197 taa 199  Q
    |||    
T  31730792 taa 31730794  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 31893751 - 31893825
Alignment:
Q  126 ctcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgagttaac 200  Q
    ||||||||||  |||| || | |||||||| ||||||| |||||||||||||||||| ||||||| |||||||||    
T  31893751 ctcactcccaactgaaaagtcaaaagtatccatgtgtgacttaagtcacgctcggtattttcagcgtgagttaac 31893825  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 12345569 - 12345659
Alignment:
Q  167 taagtcacgctcggtactttcagcatgagttaactaacgccgattgtaaattcagtgtgacttaacacacactgcgtgctgttataaaacagcaa 261  Q
    |||||||||||||||    ||||| |||||||||| |||| | ||||||| ||||||||||||||| |||  ||| |||||||||| ||||||||    
T  12345569 taagtcacgctcggt----tcagcttgagttaactcacgcaggttgtaaactcagtgtgacttaactcacgttgcatgctgttatagaacagcaa 12345659  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 10930834 - 10930953
Alignment:
Q  113 ccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgagttaactaacgccgattg 212  Q
    |||| |||||||||||||||  |  ||||  ||||||| || | ||| ||| ||||||||||||||| |||||||||| |||||||||| |||  | |||    
T  10930834 ccataaaaaaacactcactcttaactgaatggacgaaattacccatgcgtgacttaagtcacgctcgatactttcagcgtgagttaactcacgaaggttg 10930933  T
Q  213 taaattcagtgtgacttaac 232  Q
    ||||  || |||||||||||    
T  10930934 taaacacaatgtgacttaac 10930953  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 32917224 - 32917168
Alignment:
Q  41 acaaaactcaaactttgaagagggttgagcc--caaaagtgaaaatcaaaagctaaa 95  Q
    ||||||||||||||||||||||| || ||||  |||| |||||||||||||||||||    
T  32917224 acaaaactcaaactttgaagaggatttagccgtcaaaggtgaaaatcaaaagctaaa 32917168  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 13608571 - 13608661
Alignment:
Q  186 tcagcatgagttaactaacgccgattgtaaattcagtgtgacttaacacacactgcgtgctgttataaaacagcaacatcagaaacataac 276  Q
    ||||| |||||||||| |||| | |||||||  ||  |||||||||| |||| |||||| ||||||| |||| |||  |||||||||||||    
T  13608571 tcagcgtgagttaactcacgcaggttgtaaacccatcgtgacttaactcacattgcgtgttgttatagaacaacaaagtcagaaacataac 13608661  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 96 - 279
Target Start/End: Complemental strand, 34003337 - 34003154
Alignment:
Q  96 tgaaaattgttcttttcccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgag 195  Q
    |||||||||||||| || ||| ||||||||||| ||||||  ||||  |||||||||| |  |  ||| |||||||||  || |||||||||||||||||    
T  34003337 tgaaaattgttcttctcacataaaaaaacactccctcccaactgaatggacgaaagtacctctacgtgacttaagtcattctaggtactttcagcatgag 34003238  T
Q  196 ttaactaacgccgattgtaaattcagtgtgacttaacacacactgcgtgctgttataaaacagcaacatcagaaacataaccat 279  Q
    |||||| |||| |||||||||  |||  ||||||||  |||  || ||| ||||||| ||||||||  | ||||||||||||||    
T  34003237 ttaactcacgcagattgtaaacccagcatgacttaattcacgttgtgtgttgttatataacagcaaagttagaaacataaccat 34003154  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 330
Target Start/End: Complemental strand, 15424693 - 15424529
Alignment:
Q  165 cttaagtcacgctcggtactttcagcatgagttaactaacgccgattgtaaattcagtgtgacttaacacacactgcgtgctgttataaaacagcaacat 264  Q
    |||||||||||||||||||||||| | |||||||||| |    | |||||||   || |||||||||| ||  || ||| |||||||| ||||||||  |    
T  15424693 cttaagtcacgctcggtactttcatcgtgagttaactcatagaggttgtaaacctagcgtgacttaactcatgctacgttctgttatacaacagcaat-t 15424595  T
Q  265 cagaaacataaccatttatttt-caaaagcttccaaattcgaattttctcccatcaagtgcgatttt 330  Q
    |||||||||||| ||| ||||| |||||| |||||||| ||| ||||||||||||||||||||||||    
T  15424594 cagaaacataacgattcatttttcaaaag-ttccaaatacgatttttctcccatcaagtgcgatttt 15424529  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 14913509 - 14913452
Alignment:
Q  144 gacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgagttaact 201  Q
    |||||||||| | ||| ||| ||||||||||||| |||||||||| | ||||||||||    
T  14913509 gacgaaagtacccatgcgtgacttaagtcacgctaggtactttcatcgtgagttaact 14913452  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 14189564 - 14189674
Alignment:
Q  96 tgaaaattgttcttttcccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgag 195  Q
    ||||||||| |||| |||||||||| ||||||||||||||  ||||  ||||||| |||| ||| ||| ||||||||| | ||| |||||||||| ||||    
T  14189564 tgaaaattgctcttctcccatcaaataacactcactcccaactgaatggacgaaattatccatgcgtgacttaagtcatgatcgatactttcagcgtgag 14189663  T
Q  196 ttaactaacgc 206  Q
    |||||| ||||    
T  14189664 ttaactcacgc 14189674  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 16496012 - 16496136
Alignment:
Q  93 aaatgaaaattgttcttttcccat-caaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagca 191  Q
    |||||||||||| |||| ||||||  |||||||| ||| ||||| |||||  ||||||| ||   ||| ||| |||||||||| ||| ||| |||||||     
T  16496012 aaatgaaaattgctcttctcccataaaaaaaacattcattcccaattgaatggacgaaattacacatgcgtgacttaagtcacactcagtattttcagcg 16496111  T
Q  192 tgagttaactaacgccgattgtaaa 216  Q
    |||||||||| |||| | |||||||    
T  16496112 tgagttaactcacgcaggttgtaaa 16496136  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 38728598 - 38728680
Alignment:
Q  179 ggtactttcagcatgagttaactaacgccgattgtaaattcagtgtgacttaacacacactgcgtgctgttataaaacagcaa 261  Q
    ||||||||||||  ||||||||| |||  |||| ||||||||   ||||||||  ||| |||||||||||||||| |||||||    
T  38728598 ggtactttcagcgcgagttaactcacgtagattataaattcaacatgacttaagtcacgctgcgtgctgttataacacagcaa 38728680  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 12503301 - 12503410
Alignment:
Q  97 gaaaattgttcttttcccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgagt 196  Q
    |||||||| |||| ||||| |||||||||||| ||||||  ||||  ||||||||||||  || | | ||||||||||||   |||||||| |  |||||    
T  12503301 gaaaattgctcttctcccaacaaaaaacactccctcccaactgaatcgacgaaagtatctctgcgcgacttaagtcacgcaaagtactttccgtgtgagt 12503400  T
Q  197 taactaacgc 206  Q
    ||||| ||||    
T  12503401 taactcacgc 12503410  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 280
Target Start/End: Original strand, 51811087 - 51811254
Alignment:
Q  111 tcccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgagttaactaacgccgat 210  Q
    |||||||||||||||||||  ||||  ||||  |||||||||| |   | ||| ||||||||||||| |||||||||||| || ||||||| || |   |    
T  51811087 tcccatcaaaaaacactcatgcccaactgaatggacgaaagtacccc-gcgtgacttaagtcacgcttggtactttcagcgtgtgttaactcacacaagt 51811185  T
Q  211 tgtaaattcagtgtgacttaacacacactgcgtgctgttataaaacagcaacatcagaaacataaccatt 280  Q
    | ||||  ||| |||||||||| ||| ||||||||||||||| |||| |||| ||||||||| |||||||    
T  51811186 tataaacgcagcgtgacttaactcacgctgcgtgctgttatagaacaacaac-tcagaaacacaaccatt 51811254  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 33605884 - 33605823
Alignment:
Q  37 agtgacaaaactcaaactttgaagagggttgagcc--caaaagtgaaaatcaaaagctaaat 96  Q
    |||||||||||||||||||||| ||| ||||||||  ||||| | |||||||||||||||||    
T  33605884 agtgacaaaactcaaactttgaggagagttgagccaacaaaaataaaaatcaaaagctaaat 33605823  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 7255127 - 7255023
Alignment:
Q  96 tgaaaattgttcttttcccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgag 195  Q
    ||||||||| |||| | |||| |||||||||||||||||  |||||  |||  ||||| |  ||  || |||||||||| ||||||||||||||| ||||    
T  7255127 tgaaaattgctcttctaccat-aaaaaacactcactccccattgaatggacataagtacccctgcatgacttaagtcacactcggtactttcagcgtgag 7255029  T
Q  196 ttaact 201  Q
    ||||||    
T  7255028 ttaact 7255023  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 24211591 - 24211555
Alignment:
Q  165 cttaagtcacgctcggtactttcagcatgagttaact 201  Q
    |||||||||||||||||||||||||| ||||||||||    
T  24211591 cttaagtcacgctcggtactttcagcgtgagttaact 24211555  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 20928633 - 20928741
Alignment:
Q  97 gaaaattgttcttttcccatcaaaaaacactcactcccagttgaacagacgaaagtatcaatgtgtggcttaagtcacgctcggtactttcagcatgagt 196  Q
    ||||||||||||| |||||| ||||||||||| ||| ||  ||||  | |||||||  | ||||||| ||||||| |   | ||||||||||||||||||    
T  20928633 gaaaattgttcttctcccat-aaaaaacactccctctcaactgaatgggcgaaagttcccatgtgtgacttaagttatattaggtactttcagcatgagt 20928731  T
Q  197 taactaacgc 206  Q
    ||||| ||||    
T  20928732 taactcacgc 20928741  T

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