View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16537_low_8 (Length: 332)

Name: NF16537_low_8
Description: NF16537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16537_low_8
NF16537_low_8
[»] chr7 (1 HSPs)
chr7 (7-318)||(6502645-6502956)
[»] chr8 (2 HSPs)
chr8 (176-277)||(40182691-40182793)
chr8 (175-277)||(38341831-38341934)
[»] chr1 (1 HSPs)
chr1 (177-275)||(19607204-19607304)
[»] chr3 (2 HSPs)
chr3 (176-277)||(37549926-37550028)
chr3 (182-218)||(48507457-48507493)
[»] chr5 (1 HSPs)
chr5 (237-278)||(29465757-29465798)
[»] chr2 (2 HSPs)
chr2 (193-277)||(41873557-41873642)
chr2 (236-277)||(43038447-43038488)
[»] chr4 (2 HSPs)
chr4 (183-230)||(29765808-29765856)
chr4 (185-217)||(51468602-51468634)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 6502645 - 6502956
Alignment:
Q  7 gtgatatgaaatgtatgcttttgaaatccttccacgaattacaggggaatccacgcgaaccaattcgcggttcacactatgtcaagagaactatgtgact 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6502645 gtgatctgaaatgtatgcttttgaaatccttccacgaattacaggggaatccacgcgaaccaattcgcggttcacactatgtcaagagaactatgtgact 6502744  T
Q  107 gatttagtttgttagtttgtatggctgggtcattctcttggttaacaatgtaagggatcatcttctgaatattgtaaaggggaacccttggaggagagat 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6502745 gatttagtttgttagtttgtatggctgggtcattcttttggttaacagtgtaagggatcatcttctgaatattgtaaaggggaacccttagaggagagat 6502844  T
Q  207 tctctcatattcattcttattttcatattcaagtgttctttctattccactcaattcttgggttcctaacagcatattgattggtaaaaaactgagattg 306  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6502845 tctctcatattcattcttattttcatattcaagttttctttctattccgctcaattcttgggttcctaacagcatattgattggtaaaaaactgagattg 6502944  T
Q  307 atgagctatgtg 318  Q
    ||||||||||||    
T  6502945 atgagctatgtg 6502956  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 40182793 - 40182691
Alignment:
Q  176 tattgtaaaggggaacccttggaggagagattctctcatattcattcttattttc-atattcaagtgttctttctattccactcaattcttgggttccta 274  Q
    |||||| || ||||| ||||  ||||||||||||||| | ||| |||||||||||  ||||||| |||||||||| ||||| ||||||||| ||| ||||    
T  40182793 tattgtgaaagggaaacctttaaggagagattctctcctgttctttcttattttctttattcaattgttctttctgttccattcaattcttaggtcccta 40182694  T
Q  275 aca 277  Q
    |||    
T  40182693 aca 40182691  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 38341934 - 38341831
Alignment:
Q  175 atattgtaaaggggaa-cccttggaggagagattctctcatattcattcttattttcatattcaa-gtgttctttctattccactcaattcttgggttcc 272  Q
    |||||||||||||||| ||||||||||||||||| ||||  |||| ||| ||||| | || | || ||||||||||||||||| |||||| ||||||||     
T  38341934 atattgtaaaggggaaacccttggaggagagattatctcccattctttcctattt-cttagtaaaagtgttctttctattccattcaattgttgggttct 38341836  T
Q  273 taaca 277  Q
    |||||    
T  38341835 taaca 38341831  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 19607304 - 19607204
Alignment:
Q  177 attgtaaaggggaa-cccttggaggagagattctctcatattcattcttattttcat-attcaagtgttctttctattccactcaattcttgggttccta 274  Q
    ||||| |||||||| |||||||||||||||||||||| || || ||||||||||| | ||| || |||||||| |||||||  |||||  ||||||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttccta 19607205  T
Q  275 a 275  Q
    |    
T  19607204 a 19607204  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 37549926 - 37550028
Alignment:
Q  176 tattgtaaaggggaacc-cttggaggagagattctctcatattcattcttattttcatattcaagtgttctttctattccactcaattcttgggttccta 274  Q
    |||||| |||||||| | ||||||||||||||| |||| |||||  || |||||    | | ||||||||||||||||||| || |||||||||||||||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  275 aca 277  Q
    |||    
T  37550026 aca 37550028  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 48507457 - 48507493
Alignment:
Q  182 aaaggggaacccttggaggagagattctctcatattc 218  Q
    |||||| |||||||||||||||||||||||| |||||    
T  48507457 aaagggaaacccttggaggagagattctctcctattc 48507493  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 29465757 - 29465798
Alignment:
Q  237 aagtgttctttctattccactcaattcttgggttcctaacag 278  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  29465757 aagtgttctttctattccattcaattcttggattcctaacag 29465798  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 41873642 - 41873557
Alignment:
Q  193 cttggaggagagattctctcatattcattcttattttcatattcaagtg-ttctttctattccactcaattcttgggttcctaaca 277  Q
    ||||||||||||||| |||| |  || ||||||||||| || |  |||| |||||||||||||| |||  ||||||||||||||||    
T  41873642 cttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 43038488 - 43038447
Alignment:
Q  236 caagtgttctttctattccactcaattcttgggttcctaaca 277  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  43038488 caagtgtcctttctattccactccattcatgggttcctaaca 43038447  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 29765856 - 29765808
Alignment:
Q  183 aaggggaacccttggaggagag-attctctcatattcattcttattttc 230  Q
    ||||||||||||||||||||||  ||||||| ||||| |||||||||||    
T  29765856 aaggggaacccttggaggagagttttctctcctattctttcttattttc 29765808  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 51468634 - 51468602
Alignment:
Q  185 ggggaacccttggaggagagattctctcatatt 217  Q
    ||||||| |||||||||||||||||||||||||    
T  51468634 ggggaacacttggaggagagattctctcatatt 51468602  T

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