View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16538_high_2 (Length: 240)
Name: NF16538_high_2
Description: NF16538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16538_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41583455 - 41583694
Alignment:
| Q |
1 |
cagagaacaataagcctaaaatatgcgctgtactagtagtttctttccaaaaatcagggttcagaaccaaaccaagacttctggaaaatgaaactcgtag |
100 |
Q |
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| T |
41583455 |
cagagaacaataagcctaaaatatgcgctgtactagtagtttctttccaaaaatcagggttcagaaccaacccaagacttctggaaaatgaaactcgtag |
41583554 |
T |
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| Q |
101 |
agaaactaaaatcctccgatcaaatcaaatggctccttgaattgatgttgacaatacgatatatgtttacatcgctacagcttcgatgctatgtcaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41583555 |
agaaactaaaatcctccgatcaaatcaaatggctccttgaattgatattgacaatacgatatatgtttacatcgctacagcttcgatgctatgtcaaaat |
41583654 |
T |
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| Q |
201 |
ttagagaacaatatatttcttgcaaacaggagtccggtta |
240 |
Q |
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| T |
41583655 |
ttagagaacaatatatttcttgcaaacaggagtccggtta |
41583694 |
T |
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