View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16538_high_3 (Length: 237)
Name: NF16538_high_3
Description: NF16538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16538_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41583757 - 41583976
Alignment:
| Q |
1 |
aattctaattttgaaatggattaaatttgtaattttgcatacacctaaagtgtaaaacnnnnnnnnnacacatgcatccaatcaaatcacttcatgttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41583757 |
aattctaattttgaaatggattaaatttgtaattttgcatacacctaaagtgtaaaactttttttttacacatgcatccaatcaaatcacttcatgttgt |
41583856 |
T |
|
| Q |
101 |
tgccacttttttaggttagttcctctacaaatatatatttgtcatgatttgatagaatgtatgtgtaaaaaagttctacacagtcactacataaaaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41583857 |
tgccacttttttaggttagttcctctacaaatatatatttgtcatgatttgatcgaatgcatgtgtaaaaaagttctacacagtcactacataaaaatta |
41583956 |
T |
|
| Q |
201 |
acctctgttgaaatataata |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41583957 |
acctctgttgaaatataata |
41583976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 31628503 - 31628463
Alignment:
| Q |
129 |
aaatatatatttgtcatgatttgatagaatgtatgtgtaaa |
169 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
31628503 |
aaatatttattggtcatgatttgattgaatgtatgtgtaaa |
31628463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 33914083 - 33914031
Alignment:
| Q |
69 |
cacatgcatccaatcaaatcacttcatgttgttgccacttttttaggttagttcct |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
33914083 |
cacatgcatccaatcaaatcacttcatgatgt---cacatttttaggttagttcct |
33914031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 36611022 - 36610969
Alignment:
| Q |
68 |
acacatgcatccaatcaaatcacttcatgttgttgccacttttttaggttagtt |
121 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
36611022 |
acacatgcaaccaatcaaatcacttcatcatgacgccacatttttaggttagtt |
36610969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University