View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16539_high_2 (Length: 320)

Name: NF16539_high_2
Description: NF16539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16539_high_2
NF16539_high_2
[»] chr2 (7 HSPs)
chr2 (23-306)||(28596206-28596483)
chr2 (19-80)||(19536442-19536504)
chr2 (19-80)||(20539718-20539780)
chr2 (19-80)||(21374743-21374806)
chr2 (19-80)||(14996268-14996329)
chr2 (20-80)||(33519739-33519800)
chr2 (19-75)||(16069298-16069354)
[»] chr6 (12 HSPs)
chr6 (19-80)||(12696278-12696339)
chr6 (19-80)||(853903-853965)
chr6 (19-80)||(9658833-9658894)
chr6 (19-80)||(31959113-31959174)
chr6 (19-61)||(426558-426600)
chr6 (19-72)||(3398580-3398634)
chr6 (19-68)||(7977874-7977924)
chr6 (19-80)||(8365563-8365625)
chr6 (19-61)||(34595107-34595149)
chr6 (19-74)||(7938075-7938131)
chr6 (19-74)||(8777017-8777073)
chr6 (19-74)||(16766656-16766712)
[»] scaffold0171 (1 HSPs)
scaffold0171 (21-80)||(23374-23433)
[»] chr7 (4 HSPs)
chr7 (19-80)||(24105632-24105693)
chr7 (19-74)||(24339601-24339657)
chr7 (30-80)||(27944994-27945045)
chr7 (19-80)||(49107775-49107836)
[»] scaffold0223 (1 HSPs)
scaffold0223 (19-80)||(20125-20187)
[»] chr5 (10 HSPs)
chr5 (19-80)||(22013367-22013429)
chr5 (19-80)||(42469174-42469236)
chr5 (19-74)||(15382436-15382492)
chr5 (19-70)||(30135277-30135328)
chr5 (19-80)||(19820438-19820500)
chr5 (19-61)||(21522723-21522765)
chr5 (19-61)||(21533289-21533331)
chr5 (19-61)||(36642806-36642848)
chr5 (19-80)||(8419985-8420042)
chr5 (19-74)||(13287443-13287499)
[»] chr1 (5 HSPs)
chr1 (19-72)||(48040506-48040560)
chr1 (19-61)||(40917724-40917766)
chr1 (28-80)||(34315666-34315718)
chr1 (19-61)||(6612215-6612257)
chr1 (19-80)||(38078705-38078768)
[»] chr8 (9 HSPs)
chr8 (19-80)||(4298930-4298991)
chr8 (19-74)||(4673469-4673525)
chr8 (19-80)||(126393-126454)
chr8 (19-62)||(20873041-20873084)
chr8 (19-61)||(22651949-22651991)
chr8 (19-80)||(25192391-25192453)
chr8 (19-61)||(29510348-29510390)
chr8 (19-72)||(24669395-24669448)
chr8 (48-80)||(34451110-34451142)
[»] scaffold0027 (1 HSPs)
scaffold0027 (19-74)||(46641-46697)
[»] chr4 (5 HSPs)
chr4 (19-74)||(23293030-23293086)
chr4 (19-68)||(49430991-49431040)
chr4 (19-74)||(12895318-12895374)
chr4 (19-80)||(12628629-12628690)
chr4 (19-80)||(28720830-28720891)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-61)||(225312-225354)
[»] chr3 (7 HSPs)
chr3 (19-61)||(15796338-15796380)
chr3 (19-65)||(14223897-14223943)
chr3 (19-61)||(24205085-24205127)
chr3 (19-75)||(8383215-8383272)
chr3 (19-80)||(14216846-14216907)
chr3 (19-80)||(14222975-14223036)
chr3 (19-68)||(14979147-14979196)
[»] scaffold0053 (1 HSPs)
scaffold0053 (19-74)||(8757-8813)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-61)||(241567-241609)
[»] scaffold0021 (1 HSPs)
scaffold0021 (22-74)||(130441-130494)
[»] scaffold0018 (1 HSPs)
scaffold0018 (19-72)||(192293-192346)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 306
Target Start/End: Complemental strand, 28596483 - 28596206
Alignment:
Q  23 attatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattcactataactgatattcnnnnnnngcaagcactataacaaataa 122  Q
    |||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  28596483 attagctgtgtcggcgtgtcattgtccgtgtcgtgtccgtgtacgtatccgtgattcactataactgatattcaaaaaaagcaagcactataacaaataa 28596384  T
Q  123 tgcatagaatacgttgattcataggttcatcgatccatatattaggattaagttgatatgtgccacaaccttaannnnnnnnnctcttaggttcattgat 222  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||         |||||||||||||||||    
T  28596383 tgcttagaatacgttgattcataggttcatcgatccatatattaggatta-----atatgtgccacaaccttaa--tttttttctcttaggttcattgat 28596291  T
Q  223 tcatagaatatattttgtcttattgtttaaaattccacaaccttaa-ttttttctctcaaaaattttcaatttctatcaacaata 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  28596290 tcatagaatatattttgtcttattgtttaaaattccacaaccttaatttttttctctcgaaaattttcaatttctatcaacaata 28596206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 19536442 - 19536504
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtgattca 80  Q
    ||||||||  ||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||    
T  19536442 aattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttca 19536504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 20539718 - 20539780
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtgattca 80  Q
    |||||||| |||||||| ||||||| | |||||||||||||| ||||||||||||||| ||||    
T  20539718 aattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttca 20539780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 21374743 - 21374806
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtc--gtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||||||| | | ||||||||  ||||||||||||||||||||| ||||    
T  21374743 aattattagctgtgtcggcgtgttagtgtccgtgtccggtgtccgtgtccgtatccgtgcttca 21374806  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 14996268 - 14996329
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||| ||||| | |||||||| |||| | ||||||||||||| ||||    
T  14996268 aattattagctgtgtcggcttgtcagtgtccgtgtcatgtctgcgtccgtatccgtgcttca 14996329  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 33519800 - 33519739
Alignment:
Q  20 attattatctgtgtcggcgtgtcattatccgtgtcgtgtccg-tgtccgtatccgtgattca 80  Q
    ||||||| | ||||||| |||||| |||||| |||||||||| |||||||||||||| ||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttca 33519739  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 16069298 - 16069354
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtg 75  Q
    |||||||| | |||||||||||||| | |||||||| | || |||||||||||||||    
T  16069298 aattattaacggtgtcggcgtgtcagtgtccgtgtcatatctgtgtccgtatccgtg 16069354  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 12696339 - 12696278
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  12696339 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgtgtccgtatccgtgcttca 12696278  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 853903 - 853965
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtgattca 80  Q
    ||||||||  |||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  853903 aattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattca 853965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 9658894 - 9658833
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| | |||||||||||||| | ||||||||||||| ||||| ||||||||| ||||    
T  9658894 aattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctgtgtctgtatccgtgcttca 9658833  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 31959174 - 31959113
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| ||||| |||||||||| | | |||||| |||||||||||||||||||| ||||    
T  31959174 aattattagctgtgacggcgtgtcagtgttcgtgtcatgtccgtgtccgtatccgtgcttca 31959113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 426558 - 426600
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  426558 aattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccg 426600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 3398634 - 3398580
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg-tgtccgtatcc 72  Q
    |||||||| |||||||||||||||| | |||||||||||| || |||||||||||    
T  3398634 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatcc 3398580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7977874 - 7977924
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgt 68  Q
    |||||||| |||||||||||||||| ||||| |||||||||| ||||||||    
T  7977874 aattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgt 7977924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 8365563 - 8365625
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtc-cgtgtccgtatccgtgattca 80  Q
    ||||||||  ||||||||||||||| | |||||||||||||  ||||||||||||||| ||||    
T  8365563 aattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttca 8365625  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 34595149 - 34595107
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    ||||||||  ||||||||||||||||| |||||||||||||||    
T  34595149 aattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccg 34595107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 7938131 - 7938075
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    |||||||| |||||||||||||||| | ||| |||||||||| |||||||| |||||    
T  7938131 aattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgt 7938075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 8777017 - 8777073
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg-tgtccgtatccgt 74  Q
    ||||||||  ||||||||||||||| | ||||||||||||||| ||||||| |||||    
T  8777017 aattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgt 8777073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 16766712 - 16766656
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    |||||||| |||||||||||||||| | ||| |||||||||| |||||||| |||||    
T  16766712 aattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgt 16766656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 23433 - 23374
Alignment:
Q  21 ttattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    ||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||    
T  23433 ttattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgtgtccgtatccgtgcttca 23374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 24105693 - 24105632
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||||||||| | |||||||||||||||| |||||||||||| ||||    
T  24105693 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgtatccgtatccgtgcttca 24105632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 24339657 - 24339601
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    |||||||| |||||||||||||||| | ||| |||||||||| ||||||||||||||    
T  24339657 aattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgtatccgt 24339601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 27945045 - 27944994
Alignment:
Q  30 gtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtgattca 80  Q
    |||||||||||||| | |||||||||||||| ||||||||||||||| ||||    
T  27945045 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttca 27944994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 49107836 - 49107775
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| | ||||||| ||||||   |||||||||||||| |||||||||||||| ||||    
T  49107836 aattattagcggtgtcggtgtgtcagagtccgtgtcgtgtccttgtccgtatccgtgtttca 49107775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 20187 - 20125
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||    
T  20187 aattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttca 20125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 22013429 - 22013367
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||| ||||    
T  22013429 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttca 22013367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 42469236 - 42469174
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtg-tccgtgtccgtatccgtgattca 80  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||| ||||    
T  42469236 aattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttca 42469174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 15382492 - 15382436
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||||| |||||    
T  15382492 aattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgt 15382436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 30135328 - 30135277
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtat 70  Q
    ||||||||  ||||||||||||||  |||| |||||||||||||||||||||    
T  30135328 aattattagttgtgtcggcgtgtcggtatctgtgtcgtgtccgtgtccgtat 30135277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 19820438 - 19820500
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtgattca 80  Q
    |||||||| | ||||||| |||||| | |||||||||||||| ||||||||||||||| ||||    
T  19820438 aattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttca 19820500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 21522765 - 21522723
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  21522765 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 21522723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 21533331 - 21533289
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  21533331 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 21533289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 36642806 - 36642848
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  36642806 aattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccg 36642848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 8420042 - 8419985
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| || ||||||||||||||| ||||    ||||||||||||||||||||| ||||    
T  8420042 aattattagctatgtcggcgtgtcattgtccg----gtgtccgtgtccgtatccgtgcttca 8419985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 13287443 - 13287499
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    ||||||||||||||||| ||||| | | |||||||||||||| |||||||| |||||    
T  13287443 aattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgtccgt 13287499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 48040506 - 48040560
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatcc 72  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  48040506 aattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatcc 48040560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 40917766 - 40917724
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  40917766 aattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccg 40917724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 34315718 - 34315666
Alignment:
Q  28 ctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||||| ||||| |||||||||||||||| | |||||||||||| ||||    
T  34315718 ctgtgtcggcatgtcagtatccgtgtcgtgtccatatccgtatccgtgcttca 34315666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 6612215 - 6612257
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||| ||||||||||||| |||||||||||||||    
T  6612215 aattattaactgtatcggcgtgtcattgtccgtgtcgtgtccg 6612257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 38078705 - 38078768
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtc--gtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||| ||||||| | | ||||||  ||||||||||||||||||||| ||||    
T  38078705 aattattagctgtgtcgacgtgtcagtgttcgtgtccggtgtccgtgtccgtatccgtgcttca 38078768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 4298930 - 4298991
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||||||| | |||| ||||||||||||||||| |||||||| ||||    
T  4298930 aattattaactgtgtcggcgtgttagtatctgtgtcgtgtccgtgtccatatccgtgcttca 4298991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 4673469 - 4673525
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg-tgtccgtatccgt 74  Q
    ||||||||||||||||||||||||| | || |||||||||||| |||||||||||||    
T  4673469 aattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtatccgt 4673525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 126393 - 126454
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| | |||| ||||||||| ||||||| |||||||||||| |||||||||| ||||    
T  126393 aattattagcggtgttggcgtgtcagtatccgtatcgtgtccgtgtgcgtatccgtgcttca 126454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 20873084 - 20873041
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgt 62  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||    
T  20873084 aattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccgt 20873041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 22651991 - 22651949
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  22651991 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 22651949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 25192391 - 25192453
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg-tgtccgtatccgtgattca 80  Q
    |||||||| |||||||||||||||| | ||||| ||||||||| ||||||||| |||| ||||    
T  25192391 aattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttca 25192453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 29510348 - 29510390
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  29510348 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 29510390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 24669448 - 24669395
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatcc 72  Q
    |||||||| | ||||| |||||||| | || |||||||||||||||||||||||    
T  24669448 aattattaacggtgtcagcgtgtcagtgtctgtgtcgtgtccgtgtccgtatcc 24669395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 34451110 - 34451142
Alignment:
Q  48 ccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||||||||||||||||||||||| ||||    
T  34451110 ccgtgtcgtgtccgtgtccgtatccgtgcttca 34451142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 46697 - 46641
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg-tgtccgtatccgt 74  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||    
T  46697 aattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtccgt 46641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 23293030 - 23293086
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||||| |||||    
T  23293030 aattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgt 23293086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 49431040 - 49430991
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgt 68  Q
    |||||||| |||||||||||||||| | |||| |||||||||||||||||    
T  49431040 aattattagctgtgtcggcgtgtcactgtccgagtcgtgtccgtgtccgt 49430991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 12895318 - 12895374
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    ||||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||||    
T  12895318 aattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgtatccgt 12895374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 12628629 - 12628690
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||| ||||| | || ||||| ||||||| |||||||||||| ||||    
T  12628629 aattattaactgtgtcggcatgtcagtgtcagtgtcatgtccgtatccgtatccgtgcttca 12628690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 28720891 - 28720830
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    |||||||| |||||||||| ||||| | | ||||||||||||||||| |||| |||| ||||    
T  28720891 aattattagctgtgtcggcatgtcagtgttcgtgtcgtgtccgtgtctgtatacgtgcttca 28720830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 225312 - 225354
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  225312 aattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 225354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 15796338 - 15796380
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  15796338 aattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccg 15796380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 14223897 - 14223943
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtc 65  Q
    ||||||||||||||||||||||||  | || ||||||||||||||||    
T  14223897 aattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtccgtgtc 14223943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 24205085 - 24205127
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||||| |||||||||||||| | |||||||||||||||    
T  24205085 aattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccg 24205127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 8383272 - 8383215
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgtg 75  Q
    |||||||| | |||||||||||||| | |||||||||||||| |||||||| ||||||    
T  8383272 aattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtg 8383215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 14216907 - 14216846
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    ||||||||  ||||||| ||||||| | ||||||||||||| ||||||| ||||||| ||||    
T  14216907 aattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtctgtgtccgcatccgtgcttca 14216846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 14223036 - 14222975
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatccgtgattca 80  Q
    ||||||||  ||||||| ||||||| | ||||||||||||| ||||||| ||||||| ||||    
T  14223036 aattattagttgtgtcgacgtgtcagtgtccgtgtcgtgtctgtgtccgcatccgtgcttca 14222975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 14979196 - 14979147
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgt 68  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||| |||||    
T  14979196 aattattagctgtgtcggcgtgccattgtccttgtcgtgtccgtatccgt 14979147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 8813 - 8757
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    |||||||| |||||||||||||||| | |||||||||||||| |||||||| |||||    
T  8813 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgt 8757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 241609 - 241567
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccg 61  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  241609 aattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 241567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 130494 - 130441
Alignment:
Q  22 tattatctgtgtcggcgtgtcattatccgtgtcgtgtcc-gtgtccgtatccgt 74  Q
    ||||| |||||||||| ||||||| |||||||||||||| |||||||| |||||    
T  130494 tattaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtccgt 130441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 192293 - 192346
Alignment:
Q  19 aattattatctgtgtcggcgtgtcattatccgtgtcgtgtccgtgtccgtatcc 72  Q
    |||||||| | |||||||||||||| | ||||| ||||||| ||||||||||||    
T  192293 aattattaacggtgtcggcgtgtcagtgtccgtatcgtgtctgtgtccgtatcc 192346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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