View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16539_high_4 (Length: 296)
Name: NF16539_high_4
Description: NF16539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16539_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 25566473 - 25566753
Alignment:
| Q |
1 |
atatttctttttaaaaattaagtttggtttgactaaacttatgtaggattaggtaaaggactacttcatagctcctaaactcatatttcttttttaaaaa |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25566473 |
atatttctttttaaaaattaagcttggtttgactaaacttatgtag-attaggtaaaggactacttcatagctcctaaactcatatttcttttttaaaaa |
25566571 |
T |
|
| Q |
101 |
gtaagtttggtttgactaaaattaatcaagtttatgtttcgaaaatataatattttgttaattcagtggccattttaaagtatattgataattcagtggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25566572 |
gtaagtttggtttgactaaaattaatcaagtttatgtttcgaaaatataatattttgttaattcagtggccattttaaagtatattgataattcagtggc |
25566671 |
T |
|
| Q |
201 |
tcaatcatctttcattttaaatttcaggcatgttgccttattccttaaggcatcacattca-aacattgcttgccacctttt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25566672 |
tcaatcatctttcattttaaatttcaggcatgttgccttattccttaaggcatcacattcacaacattgcttgccacctttt |
25566753 |
T |
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