View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16539_high_6 (Length: 249)
Name: NF16539_high_6
Description: NF16539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16539_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 33692633 - 33692416
Alignment:
| Q |
18 |
atcattagtctagtcaaatatcgacggttgaattgaattgatactcagattcaattcaattaatgagatttgactggactaatggagggataaacaacat |
117 |
Q |
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| T |
33692633 |
atcattagtctagtcaaatatcgacggttgaattgaattgatactcagattcaattcaattaatgagatttgactggactaatggagggataaacaacat |
33692534 |
T |
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| Q |
118 |
tggactagtttttattccatctatttaattagacacattttacaactttttctttcttttccatatgtataataagcgccttatacattttactactttg |
217 |
Q |
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| T |
33692533 |
tggactagtttttattccatctatttaattagacacatgttacaactttttctttcttttccatatgt---ataagcgccttatacattttactactttg |
33692437 |
T |
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| Q |
218 |
ttaaaaagtcacgtgatgatg |
238 |
Q |
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| T |
33692436 |
ttaaaaagtcacgtgatgatg |
33692416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 33663588 - 33663531
Alignment:
| Q |
43 |
ggttgaattgaattgatactcagattcaattcaattaatgagatttgactggactaat |
100 |
Q |
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| T |
33663588 |
ggttgatttgaattgatattaagattcaattcaactagtgagatttaattggactaat |
33663531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 33674189 - 33674133
Alignment:
| Q |
44 |
gttgaattgaattgatactcagattcaattcaattaatgagatttgactggactaat |
100 |
Q |
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| T |
33674189 |
gttgatttgaattgatattaagattcaattcaaccagtgagatttaactggactaat |
33674133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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