View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16539_low_1 (Length: 393)
Name: NF16539_low_1
Description: NF16539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16539_low_1 |
 | |
|
| [»] scaffold0510 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 8189678 - 8190057
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189678 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
8189777 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189778 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
8189877 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8189878 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggctcatcgttcgggacgctttc |
8189977 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189978 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
8190057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 14291148 - 14290769
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14291148 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacacacaatggcaataccagtgccatacccat |
14291049 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291048 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
14290949 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14290948 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggctcatcgttcgggacgctttc |
14290849 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14290848 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
14290769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 386
Target Start/End: Original strand, 48350362 - 48350690
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
48350362 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
48350461 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
48350462 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtcacaattcatgacaccagaggcctatcaggctcatgtttcttggcct |
48350561 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48350562 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
48350661 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48350662 |
tcccaagtgcaactggtggttcagatgat |
48350690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 1946112 - 1946226
Alignment:
| Q |
175 |
tgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatcc |
274 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||| ||||||||| ||||| |||||| |||| ||||||||||| || ||||| ||| |
|
|
| T |
1946112 |
tgcagcaacaagcagggtaccctccggaggttatggggcaatacatgacacctccagctttccaggcttatgtgaattggcctgaggacatgccaggtcc |
1946211 |
T |
|
| Q |
275 |
ttacggagggggtgg |
289 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
1946212 |
ttatggagggggtgg |
1946226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 15944336 - 15944222
Alignment:
| Q |
175 |
tgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatcc |
274 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||| || ||||||||||| ||||| |||||| |||| ||||||||||| || ||||| ||| |
|
|
| T |
15944336 |
tgcagcaacaagcagggtaccctctggaggttatggggcagttcatgacacctccagctttccaggcttatgtcaattggcctgaggacatgccaggtcc |
15944237 |
T |
|
| Q |
275 |
ttacggagggggtgg |
289 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
15944236 |
ttatggagggggtgg |
15944222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 4715323 - 4715702
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715323 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
4715422 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715423 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
4715522 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4715523 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggctcatcgttcgggacgctttc |
4715622 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715623 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
4715702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 4023422 - 4023801
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023422 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
4023521 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
4023522 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaggcagattaccctccggaggtgatgt |
4023621 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023622 |
cacaatttatgacaccagaggcctttcaagctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
4023721 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023722 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
4023801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 4709713 - 4710092
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709713 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
4709812 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709813 |
acttggaatatactggaacctacaaaccatgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
4709912 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4709913 |
cacaattcatgacaccagaggcttttcaagctcatgtttcttggcctgagggcaggccagatccttacggagggggtggctcatcgttcgggacgctttc |
4710012 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710013 |
tgatgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
4710092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 4735129 - 4735508
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4735129 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
4735228 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4735229 |
acttggaatatactggaacctacaaaccatgctaatacttatcttcagcagtctcagtatttagtgcagaagcaagcagggtaccctccggaggtgatgt |
4735328 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4735329 |
cacaattcatgacaccaaaggcttttcaagctcatgtttcttggcctgagggcaggccagatccttacggagggggtggctcatcgttcgggacgctttc |
4735428 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4735429 |
tgatgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagataatgatg |
4735508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 7066469 - 7066848
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066469 |
acatcatccacaatcagggtccgaaccatttcagatgccaatcacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
7066568 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
7066569 |
acttggaatatgctgggagctacaaactgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaggcagattaccctccggaggtgatgt |
7066668 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7066669 |
cacaatttatgacaccagaggcctttcaagctcatgtttcttggcctgagggcaggccagatccttacggagggggtggctcatcgttcgggacgctttc |
7066768 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066769 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
7066848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 58 - 390
Target Start/End: Complemental strand, 34652191 - 34651859
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
34652191 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
34652092 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
34652091 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtcacaattcatgacaccagaagcctatcaggctcatgtttcttggcct |
34651992 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34651991 |
gagggcaggcctgatccttacggagggggtggctcatcgttcgggacgctttctgacgatatactgatgggagattctgacagagacgatccagacagag |
34651892 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34651891 |
tcccaagtgcaactggtggttcagatgatgatg |
34651859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 34838037 - 34838416
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34838037 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccataaccat |
34838136 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34838137 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
34838236 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34838237 |
cacaattcatgacaccagaggcttttcaagctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
34838336 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34838337 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
34838416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 2161037 - 2160658
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161037 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
2160938 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2160937 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagcctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
2160838 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2160837 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatcgttacgaagggggtggatcatcgttcgggacgctttc |
2160738 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2160737 |
tgacgatatattgatgggagattctgacagagacgatccagatagagtcccaagtgcaactggtggttcagatgatgatg |
2160658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 45019220 - 45018841
Alignment:
| Q |
11 |
acatcatccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccat |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45019220 |
acatcatccacaatcagggtctgaaccatttcagatgccaaccacaactgccttcgactttgccagctacacacaatggcaataccagtgccatacccat |
45019121 |
T |
|
| Q |
111 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
45019120 |
acttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaggcagaataccctccggaggtgatgt |
45019021 |
T |
|
| Q |
211 |
cacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttc |
310 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45019020 |
cacaatttatgacaccagaggcctttcaagctcatgtttcttggcctgagggcaggccagatccttacggagggggtggctcatcgttcgggacgctttc |
45018921 |
T |
|
| Q |
311 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45018920 |
tgacgatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
45018841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 58 - 390
Target Start/End: Original strand, 39056557 - 39056889
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
39056557 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
39056656 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39056657 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtcacaattcatgacaccagaggcttttcaagctcatgtttcttggcct |
39056756 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39056757 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
39056856 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39056857 |
tcccaagtgcaactggtggttcagatgatgatg |
39056889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 64 - 390
Target Start/End: Complemental strand, 41294449 - 41294123
Alignment:
| Q |
64 |
ttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtc |
163 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||| |||||||| | |||||||| |||||||| || || ||||| || ||||| || | ||||| || |
|
|
| T |
41294449 |
ttgattttgcaagcttcgctcaatggcaataccaatgccatacttacacttggaacatgctggacgccactaaccgagcaaatacctacttccagcaatc |
41294350 |
T |
|
| Q |
164 |
tcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggc |
263 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
41294349 |
ccagtatttgatgcagcagcatgcagggtacccaccagaggtgatgtcacaatttatgacaccagaggcctatcaggctcatgtttcttggcctaagggc |
41294250 |
T |
|
| Q |
264 |
aggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagagtcccaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41294249 |
aggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacaaagacgatccagacagagtcccaa |
41294150 |
T |
|
| Q |
364 |
gtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41294149 |
gtgcaactggtggttcagatgatgatg |
41294123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 63 - 390
Target Start/End: Original strand, 41302376 - 41302701
Alignment:
| Q |
63 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagt |
162 |
Q |
| |
|
|||||| |||| |||| | ||||||||||||||||||||||||| ||| | ||||| |||||||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
41302376 |
tttgacgttgcaagcttcgctcaatggcaataccagtgccatactcatgcatggaacatgctggactcaactaaccgtgctaatacatatcttcagcagt |
41302475 |
T |
|
| Q |
163 |
ctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgaggg |
262 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
41302476 |
ctcagtatttgatgcagcagcaggcagggtacccaccggaggtgatgtcacaatttatgacaccagaggcctatcagg--catttttcttggcctgaggg |
41302573 |
T |
|
| Q |
263 |
caggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagagtccca |
362 |
Q |
| |
|
|| | |||| |||| ||| |||||||||||||||| | |||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||| ||| |
|
|
| T |
41302574 |
aagactagatgcttatggaaggggtggatcatcgtttgagacgctttctgatgatatattgatgggagactctaacagagacgatccagatagagttcca |
41302673 |
T |
|
| Q |
363 |
agtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
41302674 |
agtgcaactggcggttcagatgatgatg |
41302701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 35087429 - 35087055
Alignment:
| Q |
15 |
catccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatactt |
114 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||| ||| ||||||| ||||||||||||||| | |||||||| | |||||||||| ||||| | |
|
|
| T |
35087429 |
catccacaaccagggcccgaaccatttcagattccatccatggctgccttcgactttgccagctacgcataatggcaacattagtgccatactcatacat |
35087330 |
T |
|
| Q |
115 |
ggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcaca |
214 |
Q |
| |
|
|||| |||||||| || || ||||||||||| || ||| | |||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
35087329 |
ggaacatgctggaggcaactaaccgtgctaacacatatttctagcattctcagtatttgatgcagcaacaagcagggtaccctccggagttgatgtccta |
35087230 |
T |
|
| Q |
215 |
attcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgac |
314 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| || ||||| | ||| || |
|
|
| T |
35087229 |
gttcatgacaccagaggcctatcaggctcatgtctcttggcctgagggcaggccagatgcttatggagggggtggatcatcatttgggac-ccttcagat |
35087131 |
T |
|
| Q |
315 |
gatatattgatgggagattctgacagagacgatccagacagagtcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
|| |||||||||||||||||||||| ||| |||||||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
35087130 |
gacatattgatgggagattctgacaaagatgatccagacagagtttctagtgcaactgatggttcagatgatgatg |
35087055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 386
Target Start/End: Complemental strand, 2963288 - 2962960
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
2963288 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
2963189 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
2963188 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtcacaattcatgacaccagaggcctatcaggctcatgtttcttggcct |
2963089 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2963088 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
2962989 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2962988 |
tcccaagtgcaactggtggttcagatgat |
2962960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 386
Target Start/End: Complemental strand, 29977302 - 29976974
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
29977302 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
29977203 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
29977202 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtcacaattcatgacaccagaggcctatcaggctcatgtttcttggcct |
29977103 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29977102 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
29977003 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29977002 |
tcccaagtgcaactggtggttcagatgat |
29976974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 386
Target Start/End: Original strand, 30019340 - 30019668
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
30019340 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
30019439 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
30019440 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtcacaattcatgacaccagaggcctatcaggctcatgtttcttggcct |
30019539 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30019540 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
30019639 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30019640 |
tcccaagtgcaactggtggttcagatgat |
30019668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 58 - 386
Target Start/End: Original strand, 8010200 - 8010528
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||| | |||| | |||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
8010200 |
ctgcttttgacttttcaagcttcgctcaatggcaataccagtgccatacccataaatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
8010299 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
8010300 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccggaggtgatgtcacaattcatgacaccagaggcctatcaggctcatgtttcttggcct |
8010399 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8010400 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
8010499 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8010500 |
tcccaagtgcaactggtggttcagatgat |
8010528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 58 - 390
Target Start/End: Original strand, 9573835 - 9574167
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
9573835 |
ctgcttttgactttgcaagcttcgctcaatggcaataccagtgccatacccatacatggaacatgctggacgcaaccaaccgtgctaatacatatcttca |
9573934 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
9573935 |
gcagtctcagtatgtgatgcagcagcaggctgggtacccaccagaggtgatgtcacaattcatgacaccagaggcctatcaggctcatgtttcttggcct |
9574034 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagag |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9574035 |
gagggcaggcctgatccttacggagggggtggctcatcgttcgggatgctttctgacgatatactgatgggagattctgacagagacgatccagacagag |
9574134 |
T |
|
| Q |
358 |
tcccaagtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9574135 |
tcccaagtgcaactggtggttcagatgatgatg |
9574167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 58 - 347
Target Start/End: Complemental strand, 8050109 - 8049822
Alignment:
| Q |
58 |
ctgcctttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttca |
157 |
Q |
| |
|
|||| ||||| ||||| | |||| | ||||||||| |||||||| |||| ||||| || || |||||||| || || ||||||||||| || ||| || | |
|
|
| T |
8050109 |
ctgcttttgattttgcaaactacgcccaatggcaacaccagtgcaatactcatacatgaaacatgctggaggcaactaaccgtgctaacacatattttta |
8050010 |
T |
|
| Q |
158 |
gcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcct |
257 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||| |||||||||||||| || || |||||||||||||| | |||| || |||| ||||||||| |
|
|
| T |
8050009 |
gcagtctcagtatttgatgcggcagcagacagggtaccc-ccggaggtgatgtcccagtttatgacaccagaggcctatcagacttatgtctcttggcct |
8049911 |
T |
|
| Q |
258 |
gagggcaggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgat |
347 |
Q |
| |
|
|||||||||| |||| |||| ||| |||||| ||||||||| |||||||||||||| | |||||||||| ||| |||||| |||||||| |
|
|
| T |
8049910 |
gagggcaggctagatgcttatgga-ggggtgaatcatcgtttgggacgctttctgataacatattgatggaagactctgacggagacgat |
8049822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 63 - 390
Target Start/End: Original strand, 5737 - 6062
Alignment:
| Q |
63 |
tttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagt |
162 |
Q |
| |
|
|||||| |||| |||| | ||||||||||||||||||||||||| ||| | ||||| |||||||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
5737 |
tttgacgttgcaagcttcgctcaatggcaataccagtgccatactcatgcatggaacatgctggactcaactaaccgtgctaatacatatcttcagcagt |
5836 |
T |
|
| Q |
163 |
ctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgaggg |
262 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
5837 |
ctcagtatttgatgcagcagcaggcagggtacccaccggaggtgatgtcacaatttatgacaccagaggcctatcagg--catttttcttggcctgaggg |
5934 |
T |
|
| Q |
263 |
caggccagatccttacggagggggtggatcatcgttcgggacgctttctgacgatatattgatgggagattctgacagagacgatccagacagagtccca |
362 |
Q |
| |
|
|| | |||| |||| ||| |||||||||||||||| | |||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||| ||| |
|
|
| T |
5935 |
aagactagatgcttatggaaggggtggatcatcgtttgagacgctttctgatgatatattgatgggagactctaacagagacgatccagatagagttcca |
6034 |
T |
|
| Q |
363 |
agtgcaactggtggttcagatgatgatg |
390 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
6035 |
agtgcaactggcggttcagatgatgatg |
6062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 64 - 263
Target Start/End: Original strand, 12171 - 12370
Alignment:
| Q |
64 |
ttgactttgccagctacactcaatggcaataccagtgccatacccatacttggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtc |
163 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||| |||||||| | |||||||| |||||||| || || ||||| || ||||| || | ||||| || |
|
|
| T |
12171 |
ttgattttgcaagcttcgctcaatggcaataccaatgccatacttacacttggaacatgctggacgccactaaccgagcaaatacctacttccagcaatc |
12270 |
T |
|
| Q |
164 |
tcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggc |
263 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
12271 |
ccagtatttgatgcagcagcatgcagggtacccaccagaggtgatgtcacaatttatgacaccagaggcctatcaggctcatgtttcttggcctaagggc |
12370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 5918 - 6188
Alignment:
| Q |
15 |
catccacaatcagggtccgaaccatttcagatgccaaccacaactgcctttgactttgccagctacactcaatggcaataccagtgccatacccatactt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||| |||| |||||||| |||||| |||||||| | ||||||||| | ||||||||||| || |||| |
|
|
| T |
5918 |
catccacaaccagggtccgaaccatttcagattccacccacgactgccttcgacttttccagctacgcacaatggcaacatcagtgccatactcacactt |
6017 |
T |
|
| Q |
115 |
ggaatatgctggaagctacaaaccgtgctaatacttatcttcagcagtctcagtatttagtgcagcagcaagcagggtaccctccggaggtgatgtcaca |
214 |
Q |
| |
|
|||| ||||||| ||| || ||||| || || || || | |||||||| || ||| | |||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
6018 |
ggaacatgctggcagccactaaccgagccaacacatacttccagcagtcccaatatctgatgcaacagcaagcagggtaccctccggaggttatggggca |
6117 |
T |
|
| Q |
215 |
attcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatccttacggagggg |
285 |
Q |
| |
|
||||||| ||| ||||||||| || |||| ||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
6118 |
gttcatgagacctcccgcttttcagacttatgtaaattggcctgaggacatgccaggtccttatggagggg |
6188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 52968 - 52854
Alignment:
| Q |
175 |
tgcagcagcaagcagggtaccctccggaggtgatgtcacaattcatgacaccagaggcttttcaggctcatgtttcttggcctgagggcaggccagatcc |
274 |
Q |
| |
|
||||||||||||||||||| | |||| |||| ||| || ||||||||||| ||||| |||||| |||| ||||||||||| || ||||| ||| |
|
|
| T |
52968 |
tgcagcagcaagcagggtatcttccgtaggttatggggcagttcatgacacctccagctttccaggcttatgtgaattggcctgaggacatgccaggtcc |
52869 |
T |
|
| Q |
275 |
ttacggagggggtgg |
289 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
52868 |
ttatggagggggtgg |
52854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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