View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16539_low_2 (Length: 347)
Name: NF16539_low_2
Description: NF16539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16539_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 25884685 - 25885017
Alignment:
| Q |
1 |
tcttaattaccaactcttcaactctcagagcgtcgttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884685 |
tcttaattaccaactcttcaactctcagagcgtcgttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcaca |
25884784 |
T |
|
| Q |
101 |
attctcctctcgttgcactgcattctcatccatttccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884785 |
attctcctctcgttgcactgcattctcatccatttccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataaga |
25884884 |
T |
|
| Q |
201 |
gcctgaggaaaagtcctcaaaggctcttgaagtatcttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884885 |
gcctgaggaaaagtcctcaaaggctcttgaagtatcttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcag |
25884984 |
T |
|
| Q |
301 |
ttgcaaaggtaagaacagttacaactaatggtg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
25884985 |
ttgcaaaggtaagaacagttacaactaatggtg |
25885017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 14320003 - 14320333
Alignment:
| Q |
1 |
tcttaattaccaactcttcaactctcagagcgtcgttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcaca |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||| || || |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14320003 |
tcttaattaccaactcttccactgtcaacgcctcattctcatccttatcatcccatgaaaatttcccatcttttatctccacggctacatcaccatcaca |
14320102 |
T |
|
| Q |
101 |
attctcctctcgttgcactgcattctcatccatttccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataaga |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14320103 |
attctcctctctttgcactgcattctcatccatttccttactcaccatgaactcatccaacctccctaaagatattgttgcttgagaaatcattataaga |
14320202 |
T |
|
| Q |
201 |
gcctgaggaaaagtcctcaaaggctcttgaagtatcttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcag |
300 |
Q |
| |
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|| || || |||||||||| |||||||||||| |||||||||||||||||||| || || |||||||| | ||||||||||| ||||| ||||||| || |
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| T |
14320203 |
gcttgcgggaaagtcctcacaggctcttgaagaatcttgataatcgaagttattgtaaatacagtgccggcattcaaaggaattccaattaaagttgaag |
14320302 |
T |
|
| Q |
301 |
ttgcaaaggtaagaacagttacaactaatgg |
331 |
Q |
| |
|
|| |||||||||||||||||||| ||||||| |
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|
| T |
14320303 |
ttccaaaggtaagaacagttacagctaatgg |
14320333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 14281854 - 14282176
Alignment:
| Q |
1 |
tcttaattaccaactcttcaactctcagagcgtcgttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcaca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| || || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14281854 |
tcttaattaccaactcttcaactgtcaacgcctcattctcatcgttatcatcccaagaaaatttcccatcttttatctccacagctacatcaccaccaca |
14281953 |
T |
|
| Q |
101 |
attctcctctcgttgcactgcattctcatccatttccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataaga |
200 |
Q |
| |
|
| |||| |||| |||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
14281954 |
actctcatctctttgcacagcactatcatccatttccttactcatcatgaactcatccaacctccctaaagatatagttgcttgagaaatattgataaga |
14282053 |
T |
|
| Q |
201 |
gcctgaggaaaagtcctcaaaggctcttgaagtatcttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcag |
300 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||||| ||||| | ||||||||| ||| | ||||||||||| |
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|
| T |
14282054 |
gcctgagggaaagtcctcagaggctcttgaagaatcttgataatcgaagttattgtaaaaactgtgccggccttcaaaggagttcctataaaagttgcag |
14282153 |
T |
|
| Q |
301 |
ttgcaaaggtaagaacagttaca |
323 |
Q |
| |
|
|| ||||||||||||||| |||| |
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|
| T |
14282154 |
ttccaaaggtaagaacagctaca |
14282176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 14303612 - 14303932
Alignment:
| Q |
1 |
tcttaattaccaactcttcaactctcagagcgtcgttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcaca |
100 |
Q |
| |
|
||||||| ||||| || | ||||| || ||| || |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14303612 |
tcttaatcaccaattccttaactcgcaaagcctcattctcatccatatcatcccaagaaaatttcccatcttttatctccacagctacatcaccattaca |
14303711 |
T |
|
| Q |
101 |
attctcctctcgttgcactgcattctcatccatttccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataaga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||| ||||| |||||||| |
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|
| T |
14303712 |
gttctcctctctttgcactgcattctcatccatttccttactcatcatgaacttatccaacctccctaatgatatcgttgcttgcgaaatattgataaga |
14303811 |
T |
|
| Q |
201 |
gcctgaggaaaagtcctcaaaggctcttgaagtatcttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcag |
300 |
Q |
| |
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||||| |||||||| |||| ||||||||||||||||||||| | | ||||| |||||||||||||||| ||||| ||||| || | |||||||||| |
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|
| T |
14303812 |
gcctgtggaaaagtactcataggctcttgaagtatcttgatcactgcagttactgtgaaaacagtgccagcattcagaggaatccccataaaagttgcaa |
14303911 |
T |
|
| Q |
301 |
ttgcaaaggtaagaacagtta |
321 |
Q |
| |
|
| |||| ||||||||||||| |
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|
| T |
14303912 |
ctccaaatgtaagaacagtta |
14303932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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