View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16539_low_6 (Length: 278)
Name: NF16539_low_6
Description: NF16539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16539_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 25273221 - 25273484
Alignment:
| Q |
8 |
catcatcatcatcaaaacaaaaacaaaggccatatgaaatatttgtttgagagagaaaggaaatcatnnnnnnntaagataggagaagaagtaggagcta |
107 |
Q |
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| T |
25273221 |
catcatcatcatcaaaacaaaaacaaatgccatatgaaatatttgtttgagagagaaaggaaatcataaaaaaataagataggagaagaagtaggagcta |
25273320 |
T |
|
| Q |
108 |
gctacagcatcactgcaaccacacactgatccaacatcgcaacttccaccattagcaaatcattctctcttgctatccactctggcgacctcgctctcca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25273321 |
gctacagcatcactgcaaccacacactgatccaacatcgcaacttccaccattagcaaatcattctctcttgctatccactctggcgacctcgctctcca |
25273420 |
T |
|
| Q |
208 |
caccgtcgtcgttttaactttaaactaaccgctgacaaacacttccaccatcccaccacctttg |
271 |
Q |
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| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
25273421 |
cgccatcgtcgttttaactttaaacttaccgctgacaaacacttccaccatcccatcacctttg |
25273484 |
T |
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