View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16539_low_7 (Length: 255)

Name: NF16539_low_7
Description: NF16539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16539_low_7
NF16539_low_7
[»] chr3 (12 HSPs)
chr3 (4-240)||(2856031-2856267)
chr3 (4-240)||(2768750-2768986)
chr3 (13-240)||(2758904-2759131)
chr3 (4-240)||(2748679-2748915)
chr3 (13-240)||(2818247-2818474)
chr3 (13-229)||(5412597-5412813)
chr3 (4-240)||(2838824-2839057)
chr3 (13-231)||(2797051-2797269)
chr3 (4-231)||(2790039-2790275)
chr3 (123-240)||(2807070-2807187)
chr3 (13-65)||(2755734-2755786)
chr3 (147-205)||(22648771-22648829)
[»] scaffold0691 (1 HSPs)
scaffold0691 (17-236)||(6377-6596)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 2856267 - 2856031
Alignment:
Q  4 gaaggagcagagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtc 103  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2856267 gaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtc 2856168  T
Q  104 aacaatgttacaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaa 203  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2856167 aacaaggttacaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaa 2856068  T
Q  204 gcgagaggtataacttccaaatttcacatgaacaagg 240  Q
    || ||||||||||||| ||||||||||| || |||||    
T  2856067 gccagaggtataactttcaaatttcacacgagcaagg 2856031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 2768750 - 2768986
Alignment:
Q  4 gaaggagcagagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtc 103  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||   |||| ||||||||| ||    
T  2768750 gaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatc 2768849  T
Q  104 aacaatgttacaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaa 203  Q
      |||  || |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  2768850 ttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaa 2768949  T
Q  204 gcgagaggtataacttccaaatttcacatgaacaagg 240  Q
    |||||||||||| ||| |||| |||||||||||||||    
T  2768950 gcgagaggtatagctttcaaacttcacatgaacaagg 2768986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 2758904 - 2759131
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||| ||||||| ||||||| | ||||| ||||| |||||| ||||||||| ||||||||||| |||  | |||||| || |||||||  ||    
T  2758904 gagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagatt 2759003  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| || |||||| |||||||||||||||||||| |||||    
T  2759004 acaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggt 2759103  T
Q  213 ataacttccaaatttcacatgaacaagg 240  Q
    ||||||| ||||||||| ||||||||||    
T  2759104 ataactttcaaatttcaaatgaacaagg 2759131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 2748679 - 2748915
Alignment:
Q  4 gaaggagcagagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtc 103  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||||| | || |||||||||||||||| | || | ||||||||||||    
T  2748679 gaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtc 2748778  T
Q  104 aacaatgttacaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaa 203  Q
      |||  || |||| | ||||||||||||||||||||||||| | || ||||| || |||||||||||||| || |||||||| ||||||||||||||||    
T  2748779 ggcaagattgcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaa 2748878  T
Q  204 gcgagaggtataacttccaaatttcacatgaacaagg 240  Q
    | |||||||||||||| ||||||||||| ||||||||    
T  2748879 gtgagaggtataactttcaaatttcacacgaacaagg 2748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 2818247 - 2818474
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||||  |||||||||||| ||||| |||  ||| |  ||||||| ||   |||  ||    
T  2818247 gagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagatt 2818346  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     ||||   ||| || ||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  2818347 ccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2818446  T
Q  213 ataacttccaaatttcacatgaacaagg 240  Q
    |||||||||||||||| |||||||||||    
T  2818447 ataacttccaaatttcgcatgaacaagg 2818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 5412597 - 5412813
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||| ||||| | |||| | || ||||||| |||||||| |||| |  |||||||||||  |||  ||    
T  5412597 gagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagatt 5412696  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     |||||   ||||||||||||||||||| |||| | || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  5412697 gcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggt 5412796  T
Q  213 ataacttccaaatttca 229  Q
    ||||||| |||||||||    
T  5412797 ataactttcaaatttca 5412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 2839057 - 2838824
Alignment:
Q  4 gaaggagcagagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtc 103  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||||  | || |||||||||||||||| |||| |  ||||||||  |    
T  2839057 gaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatctttatgc 2838958  T
Q  104 aacaatgttacaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaa 203  Q
    |  | |    ||||   |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| || ||| || |||||||||| ||||||    
T  2838957 atgactc---caaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaa 2838861  T
Q  204 gcgagaggtataacttccaaatttcacatgaacaagg 240  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  2838860 gcgagaggtataactttcaaatttcaaatgaacaagg 2838824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 2797051 - 2797269
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| | |||| ||||||||| ||||||  ||| | ||||||||||||  |||  ||    
T  2797051 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagatt 2797150  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     |||| | ||||||||| |||||| ||| |||  | || ||||| |||||| || |||||||| | |||||||| ||||||||||||||||| |||||||    
T  2797151 gcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggt 2797250  T
Q  213 ataacttccaaatttcaca 231  Q
    ||||||| |||||||||||    
T  2797251 ataactttcaaatttcaca 2797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 2790039 - 2790275
Alignment:
Q  4 gaaggagcagagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggc------caatcctcatgga---cgtgga 94  Q
    |||| ||| |||||||||||||||||||| ||||||| |||| |||||||| |||||| | || ||||||||      |||||||  ||||   |||  |    
T  2790039 gaagcagctgagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaa 2790138  T
Q  95 tctttagtcaacaatgttacaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatca 194  Q
    |||||| ||  |||  || |||||| |||||||||||||||||||| |||| | || ||||| |||||| |  |||||||| | |||||||| |||||||    
T  2790139 tctttattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatca 2790238  T
Q  195 aggaaagaagcgagaggtataacttccaaatttcaca 231  Q
    |||||||||| |||||||||||||| |||||||||||    
T  2790239 aggaaagaagtgagaggtataactttcaaatttcaca 2790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 2807070 - 2807187
Alignment:
Q  123 tcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttcca 222  Q
    ||||||||||||||||||||||| | || |||||  |||| |  ||||||||| ||||  |||||||||||||||||||||| |||||||||||||| ||    
T  2807070 tcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtgagaggtataacttaca 2807169  T
Q  223 aatttcacatgaacaagg 240  Q
    ||||||||||||||||||    
T  2807170 aatttcacatgaacaagg 2807187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 2755734 - 2755786
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttga 65  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2755734 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 2755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 22648829 - 22648771
Alignment:
Q  147 aaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagc 205  Q
    |||||||||| |||||||| ||||||||||| |  ||||| ||||||||||||| ||||    
T  22648829 aaattgcatccgagattcaagacattaagttatttattcgtggaatcaaggaaaaaagc 22648771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 6596 - 6377
Alignment:
Q  17 gaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaa 116  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||| |||| | ||||| ||||||  |||  ||  ||    
T  6596 gaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaa 6497  T
Q  117 gccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataa 216  Q
    ||| |||||||||||||||| | |  ||| | || ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||| || ||||||||    
T  6496 gcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataa 6397  T
Q  217 cttccaaatttcacatgaac 236  Q
    ||| ||||||| ||||||||    
T  6396 ctttcaaattttacatgaac 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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