View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16540_high_1 (Length: 305)
Name: NF16540_high_1
Description: NF16540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16540_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4985340 - 4985628
Alignment:
| Q |
1 |
gaagctatatcgttccattaatgcatttgaattcatatcactctctccaggaattgatctttctcgtttgcttgagaaaggtatgagtaaaagacatcat |
100 |
Q |
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| T |
4985340 |
gaagctatatcgttccattaatgcatttgaattcatatcactctctccaggaattgatctttctcgtttgtttgagaaaggtatgagtaaaagacatcat |
4985439 |
T |
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| Q |
101 |
gcaagattttctacaaatagaccgccttcaactgttgtgtcaaaacttgaagaaatagcacaaatagatggtagatttaaggttatgaagcaaaatggga |
200 |
Q |
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| T |
4985440 |
gcaagattttctacaaaaagaccaccttcaaatgttgtgtcaaaacttgaagaaatagcacaaatagatggtagatttaaggttatgaagcaaaatggga |
4985539 |
T |
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| Q |
201 |
ttgttagattggagggaattgagacaaggatagatgaacaactcagtatagatatagaaatttttgaagttacattttcattttatatt |
289 |
Q |
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| T |
4985540 |
ttgttagattggagggaattgagacaaggatagttgaacaactcagtatagatatagaaatttttgaagttacatcttcattttatatt |
4985628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 4982970 - 4983239
Alignment:
| Q |
20 |
aatgcatttgaattcatatcactctctccaggaattgatctttctcgtttgcttgagaaaggtatgagtaaaagacatcatgcaagattttctacaaata |
119 |
Q |
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| T |
4982970 |
aatgcatttgatatcatatcactctcttcgggacttgatctttcgggtttgtttgaaaaagatacgagtgaaggacaacatgcaagatttgctacaaata |
4983069 |
T |
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| Q |
120 |
gaccgccttcaactgttgtgtcaaaacttgaagaaatagcacaaatagatggtagatttaaggttatgaagcaaaatgggattgttagattggagggaat |
219 |
Q |
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| T |
4983070 |
gaccaccttcaacaattgtgtcaaaacttgaagagacagcacaattagttggtagatttaaggtgatgaagcaaaatgggattgttagagtggagggatt |
4983169 |
T |
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| Q |
220 |
tgagacaaggatagatgaacaactcagtatagatatagaaatttttgaagttacattttcattttatatt |
289 |
Q |
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| T |
4983170 |
tgagacaggagtaagtgaacaactcaccattgatacagaaatttttgaagttgcatcttcattttatatt |
4983239 |
T |
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