View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16540_low_1 (Length: 637)

Name: NF16540_low_1
Description: NF16540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16540_low_1
NF16540_low_1
[»] chr1 (11 HSPs)
chr1 (51-127)||(48915241-48915317)
chr1 (49-127)||(27032365-27032444)
chr1 (188-243)||(48915127-48915182)
chr1 (49-127)||(27907650-27907728)
chr1 (188-241)||(48843451-48843504)
chr1 (90-127)||(48915051-48915088)
chr1 (188-243)||(48914935-48914990)
chr1 (188-243)||(48915326-48915381)
chr1 (590-636)||(45427799-45427845)
chr1 (188-249)||(50539672-50539733)
chr1 (51-87)||(5398119-5398155)
[»] chr8 (8 HSPs)
chr8 (50-127)||(4835036-4835113)
chr8 (188-248)||(4834915-4834975)
chr8 (188-244)||(16467674-16467730)
chr8 (188-240)||(16499773-16499825)
chr8 (590-637)||(34304788-34304835)
chr8 (54-124)||(16499882-16499952)
chr8 (188-249)||(33938547-33938608)
chr8 (188-240)||(16508698-16508750)
[»] chr7 (10 HSPs)
chr7 (244-320)||(30168793-30168865)
chr7 (51-127)||(23185968-23186044)
chr7 (55-127)||(16876782-16876854)
chr7 (51-127)||(18867993-18868068)
chr7 (188-243)||(34328180-34328235)
chr7 (188-243)||(46425278-46425333)
chr7 (90-127)||(2628502-2628539)
chr7 (50-127)||(46425383-46425460)
chr7 (188-244)||(18867887-18867943)
chr7 (51-127)||(32279358-32279434)
[»] chr2 (6 HSPs)
chr2 (50-127)||(23395881-23395958)
chr2 (51-127)||(39707466-39707542)
chr2 (188-240)||(19037010-19037062)
chr2 (188-243)||(15141955-15142010)
chr2 (188-243)||(41069623-41069678)
chr2 (90-127)||(31750452-31750489)
[»] chr6 (5 HSPs)
chr6 (188-246)||(9928336-9928394)
chr6 (54-127)||(22469651-22469724)
chr6 (188-243)||(22469774-22469829)
chr6 (74-127)||(9928233-9928286)
chr6 (50-127)||(31743808-31743885)
[»] chr3 (6 HSPs)
chr3 (53-127)||(4037092-4037166)
chr3 (188-246)||(4037216-4037274)
chr3 (51-127)||(49279438-49279514)
chr3 (51-88)||(50699977-50700014)
chr3 (590-637)||(10457945-10457992)
chr3 (188-240)||(11233581-11233633)
[»] chr4 (8 HSPs)
chr4 (188-244)||(52673147-52673203)
chr4 (188-241)||(29544114-29544167)
chr4 (50-127)||(46079406-46079483)
chr4 (590-637)||(17619205-17619252)
chr4 (590-637)||(32728357-32728404)
chr4 (471-513)||(10049307-10049349)
chr4 (590-636)||(49229718-49229764)
chr4 (93-123)||(52673268-52673298)
[»] chr5 (2 HSPs)
chr5 (188-243)||(34928880-34928935)
chr5 (188-240)||(2651699-2651751)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 48915317 - 48915241
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  48915317 gggtagcacttgggtgtcattggcttttggtgccattggtgccattgatacttttgtgtctatctctctcttaacaa 48915241  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 27032444 - 27032365
Alignment:
Q  49 tggggtagcacttgggtgtcattggttttt-ggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||||||||| ||| | ||||| |||||||||| || ||| | ||  |||||||||||||||||||||||||    
T  27032444 tggggtagcacttgggtgccatagtttttttggtgtcattggtgtcatgggtaactttgtgtctatctctctcttaacaa 27032365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 48915182 - 48915127
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||||||| ||||||||| ||| | ||||||||| ||||||||||||||||    
T  48915182 aaaatgaacctatgtcaccaatgtcacaaaaaaactatggcacccaagtatttccc 48915127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 27907650 - 27907728
Alignment:
Q  49 tggggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||||||||| || ||| | ||||||||| ||||| || ||| | ||  |||||||||||||||||||||||||    
T  27907650 tggggtagcacttggatgccatagttttttggtgccattggtgtcataggtaactttgtgtctatctctctcttaacaa 27907728  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 48843451 - 48843504
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttc 241  Q
    ||||||||||||| ||||||||| ||| | ||||||||| ||||||||||||||    
T  48843451 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttc 48843504  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 48915088 - 48915051
Alignment:
Q  90 tgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  48915088 tgccattgatacttttgtgtctatctctctcttaacaa 48915051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 48914990 - 48914935
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||| ||| ||||||||| ||| | ||||||||| ||||||||||||||||    
T  48914990 aaaatgaacttatgtcaccaatgtcacaaaaaaactatggcacccaagtatttccc 48914935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 48915381 - 48915326
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||| ||| ||||||||| ||| | ||||||||| ||||||||||||||||    
T  48915381 aaaatgaacttatgtcaccaatgtcacaaaaaaactatggcacccaagtatttccc 48915326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 636
Target Start/End: Complemental strand, 45427845 - 45427799
Alignment:
Q  590 ggaaaatgttaaatgaagatctttcaatcatacaccctattgtacac 636  Q
    ||||||||||| ||||| | |||| ||||||||||||||||||||||    
T  45427845 ggaaaatgttacatgaataccttttaatcatacaccctattgtacac 45427799  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 50539733 - 50539672
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccgttata 249  Q
    ||||||||| ||| ||||||||| ||| |  |||||||| ||||||||||||||||| ||||    
T  50539733 aaaatgaacttatgtcaccaatgacaccaataaactatggcacccaagtatttcccgatata 50539672  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 5398155 - 5398119
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcatt 87  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  5398155 gggtagcacttgggtgtcattggcttttggtgccatt 5398119  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 4835113 - 4835036
Alignment:
Q  50 ggggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||||||    
T  4835113 ggggtagcacttgggtgccattggcttttggtgccattggtgccattgatacttttgtgtctatctttctcttaacaa 4835036  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 4834975 - 4834915
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccgttat 248  Q
    ||||||||||||| ||||||||  ||| | ||||||||| |||||||||||||||| ||||    
T  4834975 aaaatgaacctatgtcaccaatatcaccaaaaaactatggcacccaagtatttcccattat 4834915  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 16467674 - 16467730
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccg 244  Q
    ||||||||||||| ||||||||| ||| | ||||||||  |||||||||||||||||    
T  16467674 aaaatgaacctatatcaccaatgtcaccaaaaaactatcgcacccaagtatttcccg 16467730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 16499825 - 16499773
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtattt 240  Q
    ||||||||||||| ||||||||| ||| | ||||||||| |||||||||||||    
T  16499825 aaaatgaacctatatcaccaatgtcaccaaaaaactatggcacccaagtattt 16499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 590 - 637
Target Start/End: Original strand, 34304788 - 34304835
Alignment:
Q  590 ggaaaatgttaaatgaagatctttcaatcatacaccctattgtacacc 637  Q
    ||||||||||| ||||| ||| || |||||||||||||||||||||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacacc 34304835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 16499952 - 16499882
Alignment:
Q  54 tagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaa 124  Q
    ||||||||||||  ||| | ||||||||| ||||| |||||| ||||  ||||||| ||||||||||||||    
T  16499952 tagcacttgggttccatagttttttggtgccattggtgccatagataactttgtgtttatctctctcttaa 16499882  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 33938608 - 33938547
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccgttata 249  Q
    ||||||||||||| ||| ||||| ||| | ||||||||| ||||||||||||| || |||||    
T  33938608 aaaatgaacctatgtcatcaatggcaccaaaaaactatggcacccaagtattttccattata 33938547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 16508750 - 16508698
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtattt 240  Q
    ||||||||||||| ||||||||| ||| | |||| |||| |||||||||||||    
T  16508750 aaaatgaacctatatcaccaatgtcaccaaaaaaatatggcacccaagtattt 16508698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 30168865 - 30168793
Alignment:
Q  244 gttatattgtgggtgttatacataaaataaacatctgatatgcaatttcatcaacaaaatgaggagaaaaagttcaa 320  Q
    ||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  30168865 gttatgttgtgggtgttataca----ataaacatctgatatgcaatttcatcaacaaaacaaggagaaagagttcaa 30168793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 23186044 - 23185968
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||||||| ||| | ||||||||| ||||| |||||| | ||  |||||||||||||||||||||||||    
T  23186044 gggtagcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaa 23185968  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 16876854 - 16876782
Alignment:
Q  55 agcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||| ||| | ||||||||| ||||| |||||| | ||  |||||||||||||||||||||||||    
T  16876854 agcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaa 16876782  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 18868068 - 18867993
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||||||||||| | | ||||||| ||||| |||||| | ||  |||||||||||||||||||||||||    
T  18868068 gggtagcacttgggtgtcatagttctttggtgccattggtgccatgg-taactttgtgtctatctctctcttaacaa 18867993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 34328180 - 34328235
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||||||| ||||||||| ||| | ||||||||| ||||||||||||||||    
T  34328180 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 34328235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 46425333 - 46425278
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||||||| ||||||||| ||| | ||||||||| ||||||||||||||||    
T  46425333 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 46425278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 2628539 - 2628502
Alignment:
Q  90 tgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2628539 tgccattgatacttttgtgtctatctctctcttaacaa 2628502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 46425460 - 46425383
Alignment:
Q  50 ggggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||||||||  || | ||||||||| ||||||| || | | ||  |||||||||||||||||||||||||    
T  46425460 ggggtagcacttgggtgctatagttttttggtgccattgatcccttaggtaactttgtgtctatctctctcttaacaa 46425383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 18867943 - 18867887
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccg 244  Q
    ||||||||||||| ||||||||| ||| | ||||||||| || ||||||||||||||    
T  18867943 aaaatgaacctatgtcaccaatgacacaaaaaaactatggcatccaagtatttcccg 18867887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 32279434 - 32279358
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||| || |||| |||||  ||||||||| |||  || ||||| ||| |||||||||||||||||||||||||    
T  32279434 gggtagcatttaggtgccattgacttttggtgtaattagtgtcattggtatctttgtgtctatctctctcttaacaa 32279358  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 23395881 - 23395958
Alignment:
Q  50 ggggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||| ||||||||||| |||||| |||||||| ||||| || ||||| ||  |||||||||||||||||||||||||    
T  23395881 ggggtggcacttgggtgccattggcttttggtgccattggtgtcattggtacatttgtgtctatctctctcttaacaa 23395958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 39707542 - 39707466
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||||||| ||| | ||||||||| ||||| |||||| | ||  |||||||||||||||||||||||||    
T  39707542 gggtagcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaa 39707466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 19037062 - 19037010
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtattt 240  Q
    ||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||    
T  19037062 aaaatgaacctatgtcaccaatggcactaaaaaactatggcacccaagtattt 19037010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 15141955 - 15142010
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||||||| ||||||||| ||  | ||||||||| ||||||||||||||||    
T  15141955 aaaatgaacctatgtcaccaatgacatcaaaaaactatggcacccaagtatttccc 15142010  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 41069678 - 41069623
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||||||| ||||||||| ||| | |||| |||| ||||||||||||||||    
T  41069678 aaaatgaacctatgtcaccaatggcaccaaaaaattatggcacccaagtatttccc 41069623  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 31750452 - 31750489
Alignment:
Q  90 tgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||  |||||||||||||||||||||||||    
T  31750452 tgccattgatacctttgtgtctatctctctcttaacaa 31750489  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 9928336 - 9928394
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccgtt 246  Q
    ||||||||||||| ||||||||| ||| | ||||||||| |||||||||||||||||||    
T  9928336 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttcccgtt 9928394  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 22469651 - 22469724
Alignment:
Q  54 tagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||||||| ||| | ||||||||||||||| |||||| | ||  ||||||||||||||| |||||||||    
T  22469651 tagcacttgggtgccatagttttttggtgtcattggtgccataggtaactttgtgtctatctctttcttaacaa 22469724  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 22469774 - 22469829
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||||||| ||||||||| ||| | ||||||||| ||||| ||||||||||    
T  22469774 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccgagtatttccc 22469829  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 9928233 - 9928286
Alignment:
Q  74 tttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||| ||||| |||||| | ||  |||||||||||||||||||||||||    
T  9928233 tttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaa 9928286  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 31743808 - 31743885
Alignment:
Q  50 ggggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||| || ||||||||||| | |||||| ||  |||| || ||| |||| |||||||||||||||||| |||||||    
T  31743808 ggggtaacatttgggtgtcatagttttttgatgctattggtgtcatagatagttttgtgtctatctctcttttaacaa 31743885  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 4037092 - 4037166
Alignment:
Q  53 gtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    |||||||||||||| ||| | ||||||||| ||||| |||||| | ||  |||||||||||||||||||||||||    
T  4037092 gtagcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaa 4037166  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 4037216 - 4037274
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccgtt 246  Q
    ||||||||||||| ||||||||| ||| | ||||||||| |||||||||||||||||||    
T  4037216 aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttcccgtt 4037274  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 49279438 - 49279514
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||||||||||| || ||| | ||||||||||||||| || ||| | ||  |||||||||||||||||||||||||    
T  49279438 gggtagcacttggatgccatagttttttggtgtcattggtgtcataggtaactttgtgtctatctctctcttaacaa 49279514  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 50699977 - 50700014
Alignment:
Q  51 gggtagcacttgggtgtcattggtttttggtgtcattg 88  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  50699977 gggtagcccttgggtgtcattggtttttggtgtcattg 50700014  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 590 - 637
Target Start/End: Complemental strand, 10457992 - 10457945
Alignment:
Q  590 ggaaaatgttaaatgaagatctttcaatcatacaccctattgtacacc 637  Q
    ||||||||||| ||||| | |||| |||||||||||||||||||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacacc 10457945  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 11233581 - 11233633
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtattt 240  Q
    ||||| ||| ||| ||| ||||| ||||| |||||||||||||||||||||||    
T  11233581 aaaataaacttatgtcatcaatgacactaaaaaactatgacacccaagtattt 11233633  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 52673203 - 52673147
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttcccg 244  Q
    ||||||||||||| ||||||||| ||| | ||||||||| |||||||||||||||||    
T  52673203 aaaatgaacctatgtcaccaatgacaccaaaaaactatggcacccaagtatttcccg 52673147  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 29544167 - 29544114
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttc 241  Q
    ||||||||| ||| ||||||||| ||| | ||||||||||||||||||||||||    
T  29544167 aaaatgaacatatgtcaccaatggcaccaaaaaactatgacacccaagtatttc 29544114  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 46079483 - 46079406
Alignment:
Q  50 ggggtagcacttgggtgtcattggtttttggtgtcattgatgccattgatatttttgtgtctatctctctcttaacaa 127  Q
    ||||| ||||||||||| ||| | ||||||||||||||| |||||||   |  ||||||||||||| |||||||||||    
T  46079483 ggggtggcacttgggtgccatagttttttggtgtcattggtgccattagcacatttgtgtctatctgtctcttaacaa 46079406  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 590 - 637
Target Start/End: Complemental strand, 17619252 - 17619205
Alignment:
Q  590 ggaaaatgttaaatgaagatctttcaatcatacaccctattgtacacc 637  Q
    ||||||||||| ||||| | |||| |||||||||||||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacacc 17619205  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 590 - 637
Target Start/End: Original strand, 32728357 - 32728404
Alignment:
Q  590 ggaaaatgttaaatgaagatctttcaatcatacaccctattgtacacc 637  Q
    ||||||||||| ||||| ||| || |||||||||||||||||||||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacacc 32728404  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 10049307 - 10049349
Alignment:
Q  471 gtaaagctaaatatggaaagtaaaaagtcaaatgcaaaagaaa 513  Q
    |||| ||||||||||||| |||| |||||||||||||||||||    
T  10049307 gtaatgctaaatatggaatgtaataagtcaaatgcaaaagaaa 10049349  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 590 - 636
Target Start/End: Complemental strand, 49229764 - 49229718
Alignment:
Q  590 ggaaaatgttaaatgaagatctttcaatcatacaccctattgtacac 636  Q
    ||||||||||| ||||| ||| || ||||||||||||||||||||||    
T  49229764 ggaaaatgttatatgaacatcctttaatcatacaccctattgtacac 49229718  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 52673298 - 52673268
Alignment:
Q  93 cattgatatttttgtgtctatctctctctta 123  Q
    |||||||||||||||||||||||||||||||    
T  52673298 cattgatatttttgtgtctatctctctctta 52673268  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 34928880 - 34928935
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtatttccc 243  Q
    ||||||||| ||| ||| ||||| ||||| ||||||||| ||||||||||||||||    
T  34928880 aaaatgaacatatgtcatcaatgacactaaaaaactatggcacccaagtatttccc 34928935  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 2651699 - 2651751
Alignment:
Q  188 aaaatgaacctatttcaccaatgccactagaaaactatgacacccaagtattt 240  Q
    ||||||||| ||| ||||||||| ||| | ||||||||| |||||||||||||    
T  2651699 aaaatgaacttatgtcaccaatggcaccaaaaaactatggcacccaagtattt 2651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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