View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16541_high_1 (Length: 588)

Name: NF16541_high_1
Description: NF16541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16541_high_1
NF16541_high_1
[»] scaffold0312 (1 HSPs)
scaffold0312 (12-570)||(10839-11396)
[»] chr1 (22 HSPs)
chr1 (12-570)||(419175-419732)
chr1 (159-570)||(975429-975838)
chr1 (334-567)||(936629-936862)
chr1 (334-569)||(949536-949771)
chr1 (334-569)||(942547-942782)
chr1 (334-569)||(960508-960743)
chr1 (334-569)||(971817-972052)
chr1 (317-570)||(909870-910123)
chr1 (334-539)||(924434-924639)
chr1 (50-121)||(29833349-29833420)
chr1 (354-512)||(916410-916568)
chr1 (50-117)||(2404101-2404168)
chr1 (16-53)||(10909246-10909283)
chr1 (16-53)||(29834000-29834037)
chr1 (17-53)||(13011835-13011871)
chr1 (50-121)||(734852-734923)
chr1 (16-50)||(734588-734622)
chr1 (16-53)||(2403844-2403881)
chr1 (16-53)||(8933558-8933595)
chr1 (50-107)||(8933831-8933888)
chr1 (16-53)||(10911489-10911526)
chr1 (16-53)||(29833085-29833122)
[»] chr2 (14 HSPs)
chr2 (55-121)||(34576892-34576958)
chr2 (59-121)||(29801814-29801876)
chr2 (50-121)||(31489006-31489077)
chr2 (16-53)||(5164160-5164197)
chr2 (55-116)||(23859825-23859886)
chr2 (16-53)||(31487023-31487060)
chr2 (16-53)||(31489307-31489344)
chr2 (16-53)||(42275565-42275602)
chr2 (16-53)||(42277791-42277828)
chr2 (50-121)||(31486722-31486793)
chr2 (16-53)||(8995079-8995116)
chr2 (16-53)||(15730053-15730090)
chr2 (16-53)||(39816098-39816135)
chr2 (82-118)||(15729895-15729931)
[»] chr5 (12 HSPs)
chr5 (65-137)||(1779748-1779820)
chr5 (50-121)||(11852439-11852510)
chr5 (50-121)||(23164514-23164585)
chr5 (50-121)||(1779499-1779570)
chr5 (50-121)||(11850181-11850252)
chr5 (50-121)||(37207711-37207782)
chr5 (16-53)||(11849926-11849963)
chr5 (16-53)||(11852184-11852221)
chr5 (55-121)||(22600751-22600817)
chr5 (16-53)||(21743751-21743788)
chr5 (16-53)||(23164263-23164300)
chr5 (58-103)||(37207639-37207684)
[»] chr8 (13 HSPs)
chr8 (50-121)||(21268403-21268474)
chr8 (50-121)||(36377456-36377527)
chr8 (50-121)||(36379741-36379812)
chr8 (16-53)||(4877130-4877167)
chr8 (16-53)||(4879458-4879495)
chr8 (16-53)||(24519162-24519199)
chr8 (16-53)||(36379474-36379511)
chr8 (58-103)||(4876819-4876864)
chr8 (58-103)||(4879147-4879192)
chr8 (16-53)||(21268129-21268166)
chr8 (58-103)||(21268501-21268546)
chr8 (58-103)||(24519466-24519511)
chr8 (20-53)||(36377193-36377226)
[»] chr7 (25 HSPs)
chr7 (50-121)||(8733768-8733839)
chr7 (50-121)||(3932554-3932625)
chr7 (50-121)||(3934793-3934864)
chr7 (50-121)||(36464497-36464568)
chr7 (50-121)||(42678852-42678923)
chr7 (50-121)||(8414764-8414835)
chr7 (16-53)||(3932853-3932890)
chr7 (16-53)||(3935092-3935129)
chr7 (16-53)||(18395451-18395488)
chr7 (16-53)||(19786920-19786957)
chr7 (16-53)||(19789226-19789263)
chr7 (82-121)||(3052039-3052078)
chr7 (58-103)||(3932512-3932557)
chr7 (58-103)||(3934751-3934796)
chr7 (16-53)||(8414499-8414536)
chr7 (16-53)||(8731185-8731222)
chr7 (16-53)||(16496962-16496999)
chr7 (64-121)||(16497156-16497213)
chr7 (58-103)||(16497180-16497225)
chr7 (16-53)||(16535144-16535181)
chr7 (16-53)||(16630481-16630518)
chr7 (16-53)||(36464222-36464259)
chr7 (16-53)||(42678580-42678617)
chr7 (50-102)||(19786621-19786673)
chr7 (17-53)||(42680816-42680852)
[»] chr3 (3 HSPs)
chr3 (50-137)||(18966398-18966485)
chr3 (16-53)||(4530974-4531011)
chr3 (16-53)||(4533271-4533308)
[»] scaffold0050 (5 HSPs)
scaffold0050 (85-137)||(31475-31527)
scaffold0050 (85-137)||(29157-29209)
scaffold0050 (58-121)||(29143-29206)
scaffold0050 (16-53)||(29468-29505)
scaffold0050 (16-53)||(31783-31820)
[»] chr4 (14 HSPs)
chr4 (50-121)||(45166910-45166981)
chr4 (16-53)||(13774290-13774327)
chr4 (16-53)||(13776587-13776624)
chr4 (16-53)||(42468448-42468485)
chr4 (16-53)||(42470777-42470814)
chr4 (16-53)||(45162318-45162355)
chr4 (16-53)||(50855780-50855817)
chr4 (50-121)||(45162018-45162089)
chr4 (16-53)||(19429085-19429122)
chr4 (58-103)||(42468751-42468796)
chr4 (58-103)||(42471080-42471125)
chr4 (58-103)||(45161976-45162021)
chr4 (58-103)||(45166868-45166913)
chr4 (50-103)||(50856035-50856088)
[»] scaffold0599 (1 HSPs)
scaffold0599 (16-53)||(1755-1792)
[»] scaffold1361 (1 HSPs)
scaffold1361 (16-50)||(97-131)
[»] scaffold0008 (3 HSPs)
scaffold0008 (58-103)||(73074-73119)
scaffold0008 (84-121)||(73116-73153)
scaffold0008 (16-53)||(88485-88522)
[»] chr6 (1 HSPs)
chr6 (55-103)||(21199146-21199194)


Alignment Details
Target: scaffold0312 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 12 - 570
Target Start/End: Complemental strand, 11396 - 10839
Alignment:
Q  12 cagagacaaaaggaatggtagagaaaatagagaaacactctattagcttccttattattctttaacattatagagacttccatattattctttagtgttc 111  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11396 cagagacaaaagaaatggtagagaaaatagagaaacactctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttc 11297  T
Q  112 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  11296 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcata--gcaaatgtaaaatacttaaaactgaa 11199  T
Q  212 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttt-atactataaaaactgtgtaactattcttggatgtcaccaatagga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11198 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttttatactataaaaactgtgtaactattcttggatgtcaccaatagga 11099  T
Q  311 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 10999  T
Q  411 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10998 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 10899  T
Q  511 tgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaac 570  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10898 tgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaac 10839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 12 - 570
Target Start/End: Original strand, 419175 - 419732
Alignment:
Q  12 cagagacaaaaggaatggtagagaaaatagagaaacactctattagcttccttattattctttaacattatagagacttccatattattctttagtgttc 111  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419175 cagagacaaaagaaatggtagagaaaatagagaaacactctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttc 419274  T
Q  112 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  419275 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcata--gcaaatgtaaaatacttaaaactgaa 419372  T
Q  212 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttt-atactataaaaactgtgtaactattcttggatgtcaccaatagga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  419373 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttttatactataaaaactgtgtaactattcttggatgtcaccaatagga 419472  T
Q  311 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419473 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 419572  T
Q  411 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419573 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 419672  T
Q  511 tgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaac 570  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  419673 tgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaac 419732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 159 - 570
Target Start/End: Complemental strand, 975838 - 975429
Alignment:
Q  159 agcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagt 258  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975838 agcacacttgtaataatccatcata--gcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagt 975741  T
Q  259 ttattttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtagg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975740 ttattttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtagg 975641  T
Q  359 aggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatag 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975640 aggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatag 975541  T
Q  459 ctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctcttt 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  975540 ctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctcttt 975441  T
Q  559 gtgacacacaac 570  Q
    ||||||||||||    
T  975440 gtgacacacaac 975429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 334 - 567
Target Start/End: Complemental strand, 936862 - 936629
Alignment:
Q  334 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 433  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||||| |||     
T  936862 ccaaacaacatgatcctgaggaaggaagtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttaggattccattgtgaa 936763  T
Q  434 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 533  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  936762 gtatcagtgtgacacacagcaacagctttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagttttatgacagtaaa 936663  T
Q  534 acactgcgtaagggtaattctctttgtgacacac 567  Q
    | ||||| ||||||||| ||||||||||||||||    
T  936662 aaactgcataagggtaactctctttgtgacacac 936629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 334 - 569
Target Start/End: Complemental strand, 949771 - 949536
Alignment:
Q  334 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 433  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  949771 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccattctgat 949672  T
Q  434 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 533  Q
    |||||||||||||| ||| |||||| ||||||  || |||||||| |||| ||||| |||||||||||| |||  |||| ||| ||||| ||||||||||    
T  949671 gtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcagttttatgacagtaaa 949572  T
Q  534 acactgcgtaagggtaattctctttgtgacacacaa 569  Q
    | |||| |||||||||||||||||||||||||||||    
T  949571 aaactgtgtaagggtaattctctttgtgacacacaa 949536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 334 - 569
Target Start/End: Complemental strand, 942782 - 942547
Alignment:
Q  334 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 433  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  942782 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 942683  T
Q  434 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 533  Q
    |||||||||||||| |||||||||| ||||||  || |||||||| |||| ||||| |||||||||||| ||| ||||| ||| ||||| ||||||||||    
T  942682 gtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaa 942583  T
Q  534 acactgcgtaagggtaattctctttgtgacacacaa 569  Q
    | ||||| ||||||||||||||||||||||||||||    
T  942582 aaactgcataagggtaattctctttgtgacacacaa 942547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 334 - 569
Target Start/End: Complemental strand, 960743 - 960508
Alignment:
Q  334 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 433  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  960743 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 960644  T
Q  434 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 533  Q
    |||||||||||||| |||||||||| ||||||  || |||||||| |||| ||||| |||||||||||| ||| ||||| ||| ||||| ||||||||||    
T  960643 gtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaa 960544  T
Q  534 acactgcgtaagggtaattctctttgtgacacacaa 569  Q
    | ||||| ||||||||||||||||||||||||||||    
T  960543 aaactgcataagggtaattctctttgtgacacacaa 960508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 334 - 569
Target Start/End: Complemental strand, 972052 - 971817
Alignment:
Q  334 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 433  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  972052 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 971953  T
Q  434 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 533  Q
    |||||||||||||| |||||||||| ||||||  || |||||||| |||| ||||| |||||||||||| ||| ||||| ||| ||||| ||||||||||    
T  971952 gtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaa 971853  T
Q  534 acactgcgtaagggtaattctctttgtgacacacaa 569  Q
    | ||||| ||||||||||||||||||||||||||||    
T  971852 aaactgcataagggtaattctctttgtgacacacaa 971817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 317 - 570
Target Start/End: Complemental strand, 910123 - 909870
Alignment:
Q  317 tgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgtt 416  Q
    ||||| ||||||  || ||||||||| ||| |||   |||||| ||| |||||||||| ||| ||  ||||||||||||| |||||||| ||||||||||    
T  910123 tgtttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtt 910024  T
Q  417 ttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatc 516  Q
    |  || |||||| ||| ||||||| ||| || | ||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |||    
T  910023 taaggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatc 909924  T
Q  517 tgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaac 570  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||| ||||||||    
T  909923 tgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaac 909870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 334 - 539
Target Start/End: Complemental strand, 924639 - 924434
Alignment:
Q  334 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 433  Q
    ||||||||||||| |||  |||| || ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||  |||||| |||     
T  924639 ccaaacaacatgaccctgtggtaagaagtggcaaactggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccattgtgaa 924540  T
Q  434 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 533  Q
    ||||||| ||| || | ||||| |||||||||| || |||||||| |||| |||| ||||| | ||||| ||||||||| |  |  ||||||||| ||||    
T  924539 gtatcagagtggcaaatagcaacagctttaactttggttccatcaacaccttccataggcaaatagtaaactttagttgcacgtagtttgtgacaataaa 924440  T
Q  534 acactg 539  Q
    ||||||    
T  924439 acactg 924434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 29833349 - 29833420
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  29833349 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 29833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 512
Target Start/End: Complemental strand, 916568 - 916410
Alignment:
Q  354 gtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagc 453  Q
    |||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||  |||||| ||| |||||| |||| || | |||    
T  916568 gtaggaagtggcaaactggaacagttccaggttgaaccttgagtacatgaaaagccaaatgcttgggactccattgtgaagtatcattgtggcaaatagc 916469  T
Q  454 aatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttg 512  Q
    |  || ||||||| || | ||||||  ||| |||| ||||| | ||||| |||||||||    
T  916468 agcagttttaactttggtaccatcaataccttccataggcaaatagtaaactttagttg 916410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 2404101 - 2404168
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagaga 117  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||    
T  2404101 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaga 2404168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 10909283 - 10909246
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  10909283 gacaaaaggaaaggtagagaaaatagagaaacactcta 10909246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 29834037 - 29834000
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  29834037 gacaaaaggaaaggtagagaaaatagagaaacactcta 29834000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 13011871 - 13011835
Alignment:
Q  17 acaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13011871 acaaaaggaaaggtagagaaaatagagaaacactcta 13011835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 734852 - 734923
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||| ||||||  ||  ||| |||||||||| ||||||||||||||| ||||| |||||||    
T  734852 tctagtagcttccttgttattccctagtattctagagacttctatattattctttagtcttctaaagacttc 734923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 734588 - 734622
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacact 50  Q
    ||||||||||| |||||||||||||||||||||||    
T  734588 gacaaaaggaaaggtagagaaaatagagaaacact 734622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 2403844 - 2403881
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  2403844 gacaaaaggaaaggtagagaaaatagagaaactctcta 2403881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8933558 - 8933595
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    |||||||| || ||||||||||||||||||||||||||    
T  8933558 gacaaaagaaaaggtagagaaaatagagaaacactcta 8933595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 8933831 - 8933888
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagt 107  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||||| |||||||||    
T  8933831 tctaatagcttccttattattccatagtattttagagacttccatatttttctttagt 8933888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 10911526 - 10911489
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  10911526 gacaaaaggaaaggtagataaaatagagaaacactcta 10911489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29833085 - 29833122
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  29833085 gacaaaagggaaggtagagaaaatagagaaacactcta 29833122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 34576892 - 34576958
Alignment:
Q  55 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||||||||  ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  34576892 tagcttcctcgttattctttagtattttagagacttccatattattctttagtgttctagagacttc 34576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 29801876 - 29801814
Alignment:
Q  59 ttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||||||||||||||||  ||| |||| |||||| ||||||||||| ||||||||||||||||    
T  29801876 ttccttattattctttagtattctagatacttccctattattctttggtgttctagagacttc 29801814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 31489077 - 31489006
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| || ||||||||||    
T  31489077 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttttagagacttc 31489006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 5164160 - 5164197
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5164160 gacaaaaggaaaggtagagaaaatagagaaacactcta 5164197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 23859886 - 23859825
Alignment:
Q  55 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagag 116  Q
    ||||||||||||||||   ||  ||| |||||||| ||||||||||||||||||||||||||    
T  23859886 tagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagag 23859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 31487060 - 31487023
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  31487060 gacaaaaggaaaggtagagaaaatagagaaacactcta 31487023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 31489344 - 31489307
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  31489344 gacaaaaggaaaggtagagaaaatagagaaacactcta 31489307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42275565 - 42275602
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42275565 gacaaaaggaaaggtagagaaaatagagaaacactcta 42275602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42277791 - 42277828
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42277791 gacaaaaggaaaggtagagaaaatagagaaacactcta 42277828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 31486793 - 31486722
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||| |||| |||||||| ||||    
T  31486793 tctagtagcttccttattattccctagtattctagagacttctatattattctctagtcttctagaggcttc 31486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8995079 - 8995116
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  8995079 gacaaaaggaaaggtagagaaaatagagaaactctcta 8995116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 15730090 - 15730053
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  15730090 gacaaaaggaaaggtagagaaaatagagaaactctcta 15730053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 39816098 - 39816135
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  39816098 gacaaaaggaaaggtagagaaaatagagaaactctcta 39816135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 15729931 - 15729895
Alignment:
Q  82 tagagacttccatattattctttagtgttctagagac 118  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  15729931 tagagacttccacattattctttattgttctagagac 15729895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 1779748 - 1779820
Alignment:
Q  65 attattctttaacattatagagacttccatattattctttagtgttctagagacttctgcatttttctttagt 137  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||    
T  1779748 attattctttagtattctagagacttccatattattctttagtgttatggagacttccacatttttctttagt 1779820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 11852439 - 11852510
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  11852439 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 11852510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 23164514 - 23164585
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  23164514 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 23164585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 1779499 - 1779570
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| ||||||| |||||    
T  1779499 tctagtagcttccttattattccatagtattttagagacttctatattattctttagttttctagaaacttc 1779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 11850181 - 11850252
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||| ||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  11850181 tctagtagctttcttattattccctagtattttagagacttctatattattctttagtcttctagagacttc 11850252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 37207782 - 37207711
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  37207782 tctagtagcttccttattattccctagtattctacagacttctatattattctttagtcttctagagacttc 37207711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 11849926 - 11849963
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11849926 gacaaaaggaaaggtagagaaaatagagaaacactcta 11849963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 11852184 - 11852221
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11852184 gacaaaaggaaaggtagagaaaatagagaaacactcta 11852221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 22600817 - 22600751
Alignment:
Q  55 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||||| ||||||||||  ||  ||| |||||||||| |||||||| |||||| |||||||||||||    
T  22600817 tagctttcttattattccatagtattctagagacttctatattattatttagtcttctagagacttc 22600751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 21743788 - 21743751
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  21743788 gacaaaaggaaaggtagagaaaatagagaaactctcta 21743751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23164263 - 23164300
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  23164263 gacaaaagggaaggtagagaaaatagagaaacactcta 23164300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 37207684 - 37207639
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  37207684 cttccatattattcttcatcattctagagacttccatattattctt 37207639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 21268403 - 21268474
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  21268403 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 21268474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 36377456 - 36377527
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  36377456 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 36377527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 36379741 - 36379812
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  36379741 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 36379812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4877167 - 4877130
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4877167 gacaaaaggaaaggtagagaaaatagagaaacactcta 4877130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4879495 - 4879458
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4879495 gacaaaaggaaaggtagagaaaatagagaaacactcta 4879458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 24519162 - 24519199
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  24519162 gacaaaaggaaaggtagagaaaatagagaaacactcta 24519199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 36379474 - 36379511
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  36379474 gacaaaaggaaaggtagagaaaatagagaaacactcta 36379511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 4876864 - 4876819
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  4876864 cttccatattattcttcaccattctagagacttccatattattctt 4876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 4879192 - 4879147
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  4879192 cttccatattattcttcaccattctagagacttccatattattctt 4879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 21268129 - 21268166
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    |||||||| || ||||||||||||||||||||||||||    
T  21268129 gacaaaagaaaaggtagagaaaatagagaaacactcta 21268166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 21268501 - 21268546
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  21268501 cttccatattattcttcaccattctagagacttccatattattctt 21268546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 24519466 - 24519511
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  24519466 cttccatattattcttcaccattctagagacttccatattattctt 24519511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 36377193 - 36377226
Alignment:
Q  20 aaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  36377193 aaaggaaaggtagagaaaatagagaaacactcta 36377226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 8733768 - 8733839
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  8733768 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 8733839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 3932625 - 3932554
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| ||||| |||||||||||||||||||| |||||||||||||    
T  3932625 tctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttc 3932554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 3934864 - 3934793
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| ||||| |||||||||||||||||||| |||||||||||||    
T  3934864 tctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttc 3934793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 36464497 - 36464568
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||| ||||||||||||||||||||    
T  36464497 tctagtagcttccttattattccctagtattctagagacttctatattattatttagtgttctagagacttc 36464568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 42678852 - 42678923
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||||||||||||||| ||||||| |||||    
T  42678852 tctagtagcttccttattattccatagtattttagagacttccatattattctttagttttctagaaacttc 42678923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 8414764 - 8414835
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| ||| |||||||||||||  ||  ||| |||||||||| ||||||||||||||||||||||| |||||    
T  8414764 tctagtagtttccttattattccctagtattctagagacttctatattattctttagtgttctagatacttc 8414835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 3932890 - 3932853
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3932890 gacaaaaggaaaggtagagaaaatagagaaacactcta 3932853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 3935129 - 3935092
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3935129 gacaaaaggaaaggtagagaaaatagagaaacactcta 3935092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 18395488 - 18395451
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  18395488 gacaaaaggaaaggtagagaaaatagagaaacactcta 18395451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 19786957 - 19786920
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19786957 gacaaaaggaaaggtagagaaaatagagaaacactcta 19786920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 19789263 - 19789226
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19789263 gacaaaaggaaaggtagagaaaatagagaaacactcta 19789226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 3052078 - 3052039
Alignment:
Q  82 tagagacttccatattattctttagtgttctagagacttc 121  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  3052078 tagagacttctatattattctttagtgttatagagacttc 3052039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 3932557 - 3932512
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  3932557 cttccatattattcttcatcattctagagacttccatattattctt 3932512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 3934796 - 3934751
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  3934796 cttccatattattcttcatcattctagagacttccatattattctt 3934751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8414499 - 8414536
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  8414499 gacaaaaggaaaggtagagaaaatagaaaaacactcta 8414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8731185 - 8731222
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8731185 gacaaaaggaaaggtagataaaatagagaaacactcta 8731222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 16496962 - 16496999
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  16496962 gacaaaagggaaggtagagaaaatagagaaacactcta 16496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 16497156 - 16497213
Alignment:
Q  64 tattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||||||||| | |||| |||||||||||||||||||||| |   |||||||||||||    
T  16497156 tattattcttgatcattctagagacttccatattattcttgatcattctagagacttc 16497213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 16497180 - 16497225
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  16497180 cttccatattattcttgatcattctagagacttccatattattctt 16497225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 16535144 - 16535181
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  16535144 gacaaaagggaaggtagagaaaatagagaaacactcta 16535181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 16630518 - 16630481
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  16630518 gacaaaagggaaggtagagaaaatagagaaacactcta 16630481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 36464222 - 36464259
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  36464222 gacaaaaggaaaggtagagaaaattgagaaacactcta 36464259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42678580 - 42678617
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  42678580 gacaaaaggaaaggtagagaaaataaagaaacactcta 42678617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 19786673 - 19786621
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattct 102  Q
    |||| |||||||||||||||||  ||| ||| |||||||||||| ||||||||    
T  19786673 tctagtagcttccttattattccctaatattctagagacttccacattattct 19786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 42680852 - 42680816
Alignment:
Q  17 acaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  42680852 acaaaatgaaaggtagagaaaatagagaaacactcta 42680816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 18966398 - 18966485
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttctgcatttttctttagt 137  Q
    |||| ||||| |||||||||| | ||  ||| ||||||||||| ||||||||||| ||||||||||||||||  |||| |||||||||    
T  18966398 tctagtagctaccttattattatctagtattctagagacttccctattattctttggtgttctagagacttccacattattctttagt 18966485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4531011 - 4530974
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4531011 gacaaaaggaaaggtagagaaaatagagaaacactcta 4530974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4533308 - 4533271
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4533308 gacaaaaggaaaggtagagaaaatagagaaacactcta 4533271  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 31527 - 31475
Alignment:
Q  85 agacttccatattattctttagtgttctagagacttctgcatttttctttagt 137  Q
    ||||||||||||||||||| |||||||||||||||||  |||| |||||||||    
T  31527 agacttccatattattcttgagtgttctagagacttccacattgttctttagt 31475  T

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Target: scaffold0050; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  85 agacttccatattattctttagtgttctagagacttctgcatttttctttagt 137  Q
    ||||||||||||||||||| | |||||||||||||||  |||| |||||||||    
T  29209 agacttccatattattcttgaatgttctagagacttccacattgttctttagt 29157  T

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Target: scaffold0050; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 29206 - 29143
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    ||||| |||||||||| ||  || |||||||||||| ||| |||||||||||| ||||||||||    
T  29206 cttccatattattcttgaatgttctagagacttccacattgttctttagtgttttagagacttc 29143  T

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Target: scaffold0050; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 29505 - 29468
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  29505 gacaaaaggaaaggtagagaaaatagagaaactctcta 29468  T

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Target: scaffold0050; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 31820 - 31783
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  31820 gacaaaaggaaaggtagagaaaatagagaaactctcta 31783  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 45166981 - 45166910
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||||||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  45166981 tctagtagcttccttattattccctagtattctaaagacttctatattattctttagtcttctagagacttc 45166910  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 13774327 - 13774290
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13774327 gacaaaaggaaaggtagagaaaatagagaaacactcta 13774290  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 13776624 - 13776587
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13776624 gacaaaaggaaaggtagagaaaatagagaaacactcta 13776587  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42468448 - 42468485
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42468448 gacaaaaggaaaggtagagaaaatagagaaacactcta 42468485  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42470777 - 42470814
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42470777 gacaaaaggaaaggtagagaaaatagagaaacactcta 42470814  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 45162355 - 45162318
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  45162355 gacaaaaggaaaggtagagaaaatagagaaacactcta 45162318  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 50855780 - 50855817
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  50855780 gacaaaaggaaaggtagagaaaatagagaaacactcta 50855817  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 45162089 - 45162018
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 121  Q
    |||| |||||| ||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  45162089 tctagtagctttcttattattccctagtattctaaagacttctatattattctttagtcttctagagacttc 45162018  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 19429085 - 19429122
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  19429085 gacaaaaggaaaggtagagaaaatagagaaactctcta 19429122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 42468751 - 42468796
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  42468751 cttccatattattcttcaccattctagagacttccatattattctt 42468796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 42471080 - 42471125
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  42471080 cttccatattattcttcaccattctagagacttccatattattctt 42471125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 45162021 - 45161976
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  45162021 cttccatattattcttcaccattctagagacttccatattattctt 45161976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 45166913 - 45166868
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  45166913 cttccatattattcttcaccattctagagacttccatattattctt 45166868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 50856035 - 50856088
Alignment:
Q  50 tctattagcttccttattattctttaacattatagagacttccatattattctt 103  Q
    |||| |||||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  50856035 tctagtagcttccttattattccatagtattctagagacttccatattattctt 50856088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 1792 - 1755
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1792 gacaaaaggaaaggtagagaaaatagagaaacactcta 1755  T

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Target: scaffold1361 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 131 - 97
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacact 50  Q
    ||||||||||| |||||||||||||||||||||||    
T  131 gacaaaaggaaaggtagagaaaatagagaaacact 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 73119 - 73074
Alignment:
Q  58 cttccttattattctttaacattatagagacttccatattattctt 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  73119 cttccatattattcttcaccattctagagacttccatattattctt 73074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 73153 - 73116
Alignment:
Q  84 gagacttccatattattctttagtgttctagagacttc 121  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  73153 gagacttctatattattctttagtcttctagagacttc 73116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 88522 - 88485
Alignment:
Q  16 gacaaaaggaatggtagagaaaatagagaaacactcta 53  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  88522 gacaaaaggaaaggtagagaaaatagagaaagactcta 88485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 21199194 - 21199146
Alignment:
Q  55 tagcttccttattattctttaacattatagagacttccatattattctt 103  Q
    |||||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  21199194 tagcttccttattattccatagtattctagagacttccatattattctt 21199146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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