View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16541_high_10 (Length: 284)
Name: NF16541_high_10
Description: NF16541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16541_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 34139330 - 34139476
Alignment:
| Q |
135 |
ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34139330 |
ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatg |
34139429 |
T |
|
| Q |
235 |
gaatagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34139430 |
gaatagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
34139476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 34139183 - 34139306
Alignment:
| Q |
17 |
aacaccgatcaatctttggttgtttacatgagctaagtaatacatttattaaaatatctttctctaaggtagct--tataatgataaatttgaagattct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34139183 |
aacaccgatcaatctttggttgtttacatgagctaagtcatacatttattaaaatatctttctctaaggtagcttatataatgataaatttgaagattct |
34139282 |
T |
|
| Q |
115 |
cctcttcttgtttcttgaggttac |
138 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
34139283 |
cctcttcttgtttcttgaagttac |
34139306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 34136233 - 34136348
Alignment:
| Q |
17 |
aacaccgatcaatctttggttgtttacatgagctaagtaatacatttattaaaatatctttctctaaggtagcttataatgataaatttgaagattctcc |
116 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34136233 |
aacactgatcaatctttggttgtgtaaatgagctaagtgatacatttattaaactatctttctctactgtagcttataatgataaatttgaagattctcc |
34136332 |
T |
|
| Q |
117 |
tcttcttgtttcttga |
132 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
34136333 |
tcatcttgtttcttga |
34136348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 34136378 - 34136524
Alignment:
| Q |
135 |
ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatg |
234 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||||||| || |||||||||||||||||||||||||| ||||| |||||| ||||| ||||||| |
|
|
| T |
34136378 |
ttaccccatttatatggcttatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatg |
34136477 |
T |
|
| Q |
235 |
gaatagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
281 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| | |||| |||||| |
|
|
| T |
34136478 |
gaatagaaaacctctctttctccttgttcaccattactctatgctcc |
34136524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 281
Target Start/End: Original strand, 34142013 - 34142156
Alignment:
| Q |
138 |
ccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatggaa |
237 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| || |||||||| || ||||| |||| |||| |||||||||||| |||||||| |||| |
|
|
| T |
34142013 |
ccccatttatatggcctatattttgaagggttttgctcatttataagctcttcaaaaggtttgacttcagcgtcatatcctgggaataaaaagaagggaa |
34142112 |
T |
|
| Q |
238 |
tagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
281 |
Q |
| |
|
||||||| ||||| ||||| || |||| | |||||||||||| |
|
|
| T |
34142113 |
tagaaaacctttccttctctgtgctcacaatcgctctgtgctcc |
34142156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 34141926 - 34141980
Alignment:
| Q |
78 |
ctctaaggtagcttataatgataaatttgaagattctcctcttcttgtttcttga |
132 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
34141926 |
ctctagggtagcttataatgataaatttgaagattctccacatcttgtttcttga |
34141980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University