View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16541_high_11 (Length: 278)
Name: NF16541_high_11
Description: NF16541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16541_high_11 |
 | |
|
| [»] scaffold0135 (7 HSPs) |
| | |
|
| [»] scaffold0959 (1 HSPs) |
| | |
|
| [»] scaffold0753 (3 HSPs) |
| | |
|
| [»] scaffold0091 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 9275829 - 9275588
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9275829 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
9275730 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9275729 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
9275630 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
9275629 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
9275588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 9208643 - 9208401
Alignment:
| Q |
19 |
ctgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
9208643 |
ctgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagattatcgtctccgcaaggattattc |
9208544 |
T |
|
| Q |
119 |
tgtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9208543 |
tgtgacgagaatgttctattagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactc |
9208444 |
T |
|
| Q |
219 |
ttgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
9208443 |
ttgaatcgtcctaagtattttactatagaatctccatgcatat |
9208401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 9204423 - 9204182
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
9204423 |
tgtttaaacaaaattttgaaagatgatgataaatctggtaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
9204324 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9204323 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
9204224 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
9204223 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
9204182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 9244249 - 9244082
Alignment:
| Q |
19 |
ctgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcacc-aattgcttaagtaatttagtattaagattatcgtcttcacaaggattatt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||||||| || || |||||||||||| |||||||||||||||||| ||| |||| || |
|
|
| T |
9244249 |
ctgttcaaacaaaattttgaaagatgatgataaatttggaaagtgcaccaaactgattaagtaatttattattaagattatcgtctttgcaatgattgtt |
9244150 |
T |
|
| Q |
118 |
ctgtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt |
194 |
Q |
| |
|
| ||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
9244149 |
gtatgacgagaatgttct---------atgagaaacctttctcaatgtcaaaattgctttgtttgatttctattctt |
9244082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 9286166 - 9286046
Alignment:
| Q |
25 |
aaacaaaattttgaaagatgatgataaatctggcaagtgcac-caattgcttaagtaatttagtattaagattatcgtcttcacaaggattattctgtga |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||| || || |||||||||||| || |||||||||||| | |||||||||| || | ||| |
|
|
| T |
9286166 |
aaacaaaattttgaaagatgatgataaatttggcaaatgcacgaaaatgtttaagtaatttaatagtaagattatcgtgtacacaaggattgttgtatga |
9286067 |
T |
|
| Q |
124 |
cgagaatgttctattagagaca |
145 |
Q |
| |
|
|| || ||||||||||||||| |
|
|
| T |
9286066 |
tgataa-gttctattagagaca |
9286046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 7580827 - 7580761
Alignment:
| Q |
128 |
aatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt |
194 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
7580827 |
aatgttctattagggacatgagaaacctttctcaaagtcaaaattgctttgtttgatttctattctt |
7580761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 2506 - 2265
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
2506 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
2407 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2406 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
2307 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2306 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
2265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 6721 - 6480
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
6721 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
6622 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6621 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
6522 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
6521 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
6480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 10936 - 10695
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
10936 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
10837 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10836 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
10737 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10736 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
10695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 15151 - 14910
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
15151 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
15052 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
14952 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
14951 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
14910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 19366 - 19125
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
19366 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
19267 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19266 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
19167 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
19166 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
19125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 23581 - 23340
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
23581 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
23482 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23481 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
23382 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
23381 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
23340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 27796 - 27555
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
27796 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct |
27697 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27696 |
gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct |
27597 |
T |
|
| Q |
220 |
tgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
27596 |
tgaatcgtcctaagtattttactatagaatctccatgcatat |
27555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0959 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0959
Description:
Target: scaffold0959; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 3076 - 2826
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| | |
|
|
| T |
3076 |
tgtttaaacaaaattttgaaagatgatgatagatctggcaagtgtaccaactgcttaagtaatttagtagtaagattatcgtctcctcaaggattattat |
2977 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct---------tatcttgaatagtgatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
2976 |
gtgacgagaatgttctattagagacatgaaaaacctttttcaatgtcgaaattggtttgtttgatttgtattcttccaaatcatatcttgaatagtgatg |
2877 |
T |
|
| Q |
211 |
ggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
| ||||||||| ||| ||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2876 |
gaaaactcttggatcatcctaagtatttttcgatagaatctccatgcatat |
2826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 681 - 931
Alignment:
| Q |
20 |
tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| | |
|
|
| T |
681 |
tgtttaaacaaaattttgaaacatgatgacaaatctggcaagtgcaccaactgcttaagtaatttagtatcaagattatcgtctccacaaggattatttt |
780 |
T |
|
| Q |
120 |
gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct---------tatcttgaatagtgatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| || |||||||| || ||||||| |||||| ||| |||||| |||||| |
|
|
| T |
781 |
gtgacgagaatgttctattagagacatgaaaaaccttcctcaatctcaaaattgctctgtttgatttttattcttccaaatcatatattgaatggtgatg |
880 |
T |
|
| Q |
211 |
ggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
881 |
taaaactcttggatcatcctaagtattttacgatagaatatccatgcatat |
931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 2774 - 2941
Alignment:
| Q |
19 |
ctgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcacc-aattgcttaagtaatttagtattaagattatcgtcttcacaaggattatt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||||||| || || |||| |||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
2774 |
ctgttgaaacaaaattttgaaagatgatgataaatttggaaagtgcaccgaactgattaaataatttagtattaagattatcgtctttgcaatgattgtt |
2873 |
T |
|
| Q |
118 |
ctgtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt |
194 |
Q |
| |
|
| ||||||||||||||| |||| ||||||||||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
2874 |
gtatgacgagaatgttct---------atgagaaacctttctcaatgtcaaaattgttttgtttgatttctattctt |
2941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 2971 - 3013
Alignment:
| Q |
219 |
ttgaatcgtcctaagtattttacgatagaatctccacgcatat |
261 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
2971 |
ttggatcgtcctaagtattttatgatagaatctccatgcatat |
3013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 15787 - 15913
Alignment:
| Q |
143 |
acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagt |
234 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| |||||||||||||||||| | | ||||| | | || ||||| |
|
|
| T |
15787 |
acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattctccaaattatatcttgaatagtgatggaagattcttggaccatcataagt |
15886 |
T |
|
| Q |
235 |
attttacgatagaatctccacgcatat |
261 |
Q |
| |
|
||||| ||||||||||||| |||||| |
|
|
| T |
15887 |
cttttatgatagaatctccaagcatat |
15913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 8980575 - 8980641
Alignment:
| Q |
128 |
aatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt |
194 |
Q |
| |
|
|||||||||||| || |||| ||| ||||||||| ||| |||||| |||| ||||||||||||||| |
|
|
| T |
8980575 |
aatgttctattatggatatgagaaatctttctcaaagtcaaaattgttttgtttgatttctattctt |
8980641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 26649526 - 26649476
Alignment:
| Q |
143 |
acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct |
193 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| |
|
|
| T |
26649526 |
acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattct |
26649476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 26649678 - 26649628
Alignment:
| Q |
143 |
acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct |
193 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| |
|
|
| T |
26649678 |
acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattct |
26649628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 26921111 - 26921061
Alignment:
| Q |
143 |
acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct |
193 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| |
|
|
| T |
26921111 |
acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattct |
26921061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 26921263 - 26921213
Alignment:
| Q |
143 |
acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct |
193 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| |
|
|
| T |
26921263 |
acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattct |
26921213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 9308553 - 9308503
Alignment:
| Q |
143 |
acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct |
193 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| ||||||||| |||| |
|
|
| T |
9308553 |
acatgaaaaacctttctcaaagtcaaaattcctttgattgatttctcttct |
9308503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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