View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16541_high_6 (Length: 407)
Name: NF16541_high_6
Description: NF16541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16541_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 35907758 - 35908136
Alignment:
| Q |
12 |
atgaactgtggcacatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907758 |
atgaactgtggcacatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactg |
35907857 |
T |
|
| Q |
112 |
ctgttggcactccaaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907858 |
ctgttggcactccaaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctga |
35907957 |
T |
|
| Q |
212 |
ggcatggttcaagattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttagaataatatttatttatttatgtgtgcatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35907958 |
ggcatggttcaagattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttagaataatatttatttatttatgtgtgcatt |
35908057 |
T |
|
| Q |
312 |
tgagttctgcaataatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagtt |
390 |
Q |
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| T |
35908058 |
tgagttctgcaataatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagtt |
35908136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 40 - 254
Target Start/End: Original strand, 35915371 - 35915598
Alignment:
| Q |
40 |
gtgaaaatttggatgacgaaatgatttgtag-gatttgccatctggcctctgggcaaccgttagaagcaa---------ctgctgttggcactccaaata |
129 |
Q |
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|||||||||||||||| |||||||||||||| ||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||| | | |
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| T |
35915371 |
gtgaaaatttggatgatgaaatgatttgtagagatttctcatctggactctgagcaaccgttagaagcaagtcaagcaactgctgttggcactccacaca |
35915470 |
T |
|
| Q |
130 |
ttgctgataaaagtacaggtttgattatgcttggt---tgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctgaggcatggttcaagat |
226 |
Q |
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|||| |||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||| |||| || |||||||||||||||||||||||||| |
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| T |
35915471 |
gtgctaataaaaatacagatttgattatgcttggtggttgtgcatgtaaagatgaactaggaattgcacgaagtcattgcgctgaggcatggttcaagat |
35915570 |
T |
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| Q |
227 |
taaaggaaacaggtaactttttcttttg |
254 |
Q |
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| T |
35915571 |
taaaggaaacaaataactttttcttttg |
35915598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 33911151 - 33911529
Alignment:
| Q |
12 |
atgaactgtggcacatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911151 |
atgaactgtggcacatgtgaaggttttggtgaaaatttggatgacgaaatgatttgtaggatttgccatctggcctctgggcaaccgttagaagcaactg |
33911250 |
T |
|
| Q |
112 |
ctgttggcactccaaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911251 |
ctgttggcactccaaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacacagccattgcgctga |
33911350 |
T |
|
| Q |
212 |
ggcatggttcaagattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttagaataatatttatttatttatgtgtgcatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
33911351 |
ggcatggttcaagattaaaggaaacaggtaactttttcttttgttaatgtctgttcattactaattcttagaataatgtttatttatttatgtgtgcatt |
33911450 |
T |
|
| Q |
312 |
tgagttctgcaataatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagtt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33911451 |
tgagttctgcaataatgcttacaatgttgacattgtgtattttgaacaatgctatagggactaaacagacctttaagtt |
33911529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 283
Target Start/End: Complemental strand, 46538014 - 46537834
Alignment:
| Q |
98 |
gttagaagcaactgctgttggcactccaaatattgctgataaaagtacaggtttgattatgcttggttgtgcatgtaaagatgagctaggaatcgcacac |
197 |
Q |
| |
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||||||||||| ||||||||||| |||||||| |||| |||| ||| | |||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
46538014 |
gttagaagcaaatgctgttggcaatccaaatagtgctaataatggtaaatgtttgattatgcttggttgtgcatgtaaagatgagctaggcattgcacac |
46537915 |
T |
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| Q |
198 |
agccattgcgctgaggcatggttcaagatt-aaaggaaacaggtaactttttcttttgttaatgtctgttcattactagttcttaga |
283 |
Q |
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|||||||||||||||||||| ||| ||||| |||||||||| |||| |||||||||||| |||||||||||||||| |||| |
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| T |
46537914 |
agccattgcgctgaggcatgtttctagattaaaaggaaacacgtaa------tttttgttaatgtttgttcattactagttcgtaga |
46537834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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