View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16541_low_12 (Length: 277)
Name: NF16541_low_12
Description: NF16541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16541_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 4257675 - 4257428
Alignment:
| Q |
14 |
atgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccat |
113 |
Q |
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| T |
4257675 |
atgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccat |
4257576 |
T |
|
| Q |
114 |
tgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacgcatgacttcaaataatgtggcaagtcatcataactca |
213 |
Q |
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| T |
4257575 |
tgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacacatgacttcaaataatgtggcaagtcatcataactca |
4257476 |
T |
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| Q |
214 |
tgcctaaaattcttgttatattagctaaatgtggattatggtctaact |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4257475 |
tgcctaaaattcttgttatattagctaaatgtggattacggtctaact |
4257428 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 22620436 - 22620542
Alignment:
| Q |
18 |
accaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccattgcc |
117 |
Q |
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||||||||||| |||||||||||||| || ||| | ||| ||||||| ||||||| || ||| ||| | ||| |||||||| || ||||||||||||| |
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| T |
22620436 |
accaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgcc |
22620535 |
T |
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| Q |
118 |
gaatcaa |
124 |
Q |
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||||||| |
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| T |
22620536 |
gaatcaa |
22620542 |
T |
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