View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16541_low_5 (Length: 417)
Name: NF16541_low_5
Description: NF16541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16541_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 327069 - 326709
Alignment:
| Q |
18 |
ctatactaatatatatgtatggttgtgtaggccaatatgcttgaaggaggaggcaaaacaccgatactcactcctcttgaacttgaagacattggttata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
327069 |
ctatactaatatatatgtatggttgtgtaggccaatatgcttgaaggaggaggcaaaacaccgatactcactcctcttgaacttcaagacattggttata |
326970 |
T |
|
| Q |
118 |
aaattgttgcctatcgcctttccttgattggagtttctatacgagcaatgcaggtgacatggtcctccctttctttaaccttgataatcattaattgann |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326969 |
aaattgttgcctatcgcctttccttgattgcagtttctatacgagcaatgcaggtgacatggtcctccctttctttaaccttgataatcattaattgatt |
326870 |
T |
|
| Q |
218 |
nnnnnnatgctgatgataagttcatgattgagataatacatgccaagagccgcttttctgtagtagtctgagtaatacatttagcaaaacaatatccaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326869 |
ttttttatgctgatgataagttcatgattgagataatacatgccaagagccgcttttctgtagtagtctgagtaatacatttagcaaaacaatatccaag |
326770 |
T |
|
| Q |
318 |
aactggttctattttcaaattcatcaaattttcagaagagtttctattgtaattatattat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326769 |
aactggttctattttcaaattcatcaaattttcagaagagtttctattgtaattatattat |
326709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 621166 - 621439
Alignment:
| Q |
18 |
ctatactaatatatatgtatggttgtgtaggccaatatgcttgaaggaggaggcaaaacaccgatactcactcctcttgaacttgaagacattggttata |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
621166 |
ctatactaatatttatgtatggttgtgtaggccaatatgcttgaaggaggaggcaaaacaccgatactcactcctcttgaacttgaagacattggttata |
621265 |
T |
|
| Q |
118 |
aaattgttgcctatcgcctttccttgattggagtttctatacgagcaatgcaggtgacatggtcctccctttctttaaccttgataatcattaattgann |
217 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
621266 |
aaattgttgcctatcccctttccttgattggagtttctatacgagcaatgcaggtgacatggtcctccctttctttaaccttgataatcattaattgatt |
621365 |
T |
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| Q |
218 |
nnnnnnatgctgatgataagttcatgattgagataatacatgccaagagccgcttttctgtagtagtctgagta |
291 |
Q |
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| T |
621366 |
gtttttatgctgatgataagttcatgattgagataatacatgccaagagccacttttttttattagtctgagta |
621439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 288 - 378
Target Start/End: Original strand, 621533 - 621623
Alignment:
| Q |
288 |
agtaatacatttagcaaaacaatatccaagaactggttctattttcaaattcatcaaattttcagaagagtttctattgtaattatattat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
621533 |
agtaatacatttagcaaaacaatatccaagaactggttctattttcaaattcatcaaattttcagaagagtttctattgtaattatattat |
621623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 529118 - 529247
Alignment:
| Q |
43 |
tgtaggccaatatgcttgaaggaggaggcaaaacaccgatactcactcctcttgaacttgaagacattggttataaaattgttgcctatcgcctttcctt |
142 |
Q |
| |
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||||||| |||||||||||| |||| || |||||||| ||||| | ||||| |||||||| | ||||||||||| | | || |||| ||||| || |
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| T |
529118 |
tgtaggcgaatatgcttgaacgaggtggaaaaacaccaatacttaatcctcaagaacttgatcaagttggttataaactcgctgtttatccactttcttt |
529217 |
T |
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| Q |
143 |
gattggagtttctatacgagcaatgcaggt |
172 |
Q |
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||| || ||||||||||| ||||||||||| |
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| T |
529218 |
gatgggggtttctatacgtgcaatgcaggt |
529247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 3186023 - 3185981
Alignment:
| Q |
374 |
attatactctaaccacaaaagaaaattaacatttaaccacaaat |
417 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
3186023 |
attattctctaaccacaaaa-aaaattaacatttaaccacaaat |
3185981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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