View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16541_low_7 (Length: 350)
Name: NF16541_low_7
Description: NF16541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16541_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 5867501 - 5867833
Alignment:
| Q |
1 |
aattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaaattgggtccct |
100 |
Q |
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| T |
5867501 |
aattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaaattgggtccct |
5867600 |
T |
|
| Q |
101 |
cctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctctcatattgatatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
5867601 |
cctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctcccatattgatatct |
5867700 |
T |
|
| Q |
201 |
caaatgcaagtgtctttgatatcgtgccaaattggttttgggatttgtcacctagagttgagtatatgaatctctcctacaatgaattgaaaagatgtgg |
300 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||| ||| ||||||||| |
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| T |
5867701 |
caaatgcaggtgtctctgattatgtgccaaattggttttgggatttgtcacctaatgttgagtatatgaacctctcttctaatgagctgagaagatgtgg |
5867800 |
T |
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| Q |
301 |
gcaaaaattttctcaaaaattcaaacttaaaac |
333 |
Q |
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| T |
5867801 |
acaagatttttcacaaaaattcaaactaaaaac |
5867833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 36965831 - 36965499
Alignment:
| Q |
1 |
aattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaaattgggtccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
36965831 |
aattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatgatgtaactttgaacatgagcaaaaattggatccct |
36965732 |
T |
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| Q |
101 |
cctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctctcatattgatatat |
200 |
Q |
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|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
36965731 |
cctttccaacttgaaaatataggtttggcgaaatgtcatttgggccctcaatttccaaaatggattcaaacgcagaagaatttttcccatattgatatat |
36965632 |
T |
|
| Q |
201 |
caaatgcaagtgtctttgatatcgtgccaaattggttttgggatttgtcacctagagttgagtatatgaatctctcctacaatgaattgaaaagatgtgg |
300 |
Q |
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|||||||| ||||||||||||| || |||||||||||||||||||||| ||||| |||||| ||||||| ||||| ||||||| ||| ||| ||||| |
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| T |
36965631 |
caaatgcaggtgtctttgatattgtaccaaattggttttgggatttgttgcctagtgttgagcatatgaacctctcttacaatgggctgagaagttgtgg |
36965532 |
T |
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| Q |
301 |
gcaaaaattttctcaaaaattcaaacttaaaac |
333 |
Q |
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|| | ||||| |||||||||||||||||||| |
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| T |
36965531 |
acatgatttttcacaaaaattcaaacttaaaac |
36965499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 36977570 - 36977238
Alignment:
| Q |
1 |
aattatcagtgatgttcatcttgcaaactttagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcaaaaattgggtccct |
100 |
Q |
| |
|
||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36977570 |
aattatcagtgatgttcatttagctaacttcagcaacctcaaagtgttggacctatcttttaatcatgtaactttgaacatgagcgaaaattgggtccct |
36977471 |
T |
|
| Q |
101 |
cctttccaacttgaaactataggtttggccaattgtcatttgggcccacaatttccaaaatggattcaaacgcagaagaatttctctcatattgatatat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||| | |
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| T |
36977470 |
cctttccaacttgaaattataggtttggccaattgtcatttgggccatcaatttccacaatggattcaaactcagaagaatttctcccatattgatatct |
36977371 |
T |
|
| Q |
201 |
caaatgcaagtgtctttgatatcgtgccaaattggttttgggatttgtcacctagagttgagtatatgaatctctcctacaatgaattgaaaagatgtgg |
300 |
Q |
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||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||| | |
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| T |
36977370 |
caaatacaagtgtcggtgatactgtgccaaattggttttgggatttgtcacctaatgttgagtatatgaacctctcctgcaatgaactgaaaagatgtag |
36977271 |
T |
|
| Q |
301 |
gcaaaaattttctcaaaaattcaaacttaaaac |
333 |
Q |
| |
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||| | |||||| ||||||||||||||||||| |
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| T |
36977270 |
acaagatttttctgaaaaattcaaacttaaaac |
36977238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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