View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16542_low_1 (Length: 714)
Name: NF16542_low_1
Description: NF16542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16542_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 24 - 568
Target Start/End: Complemental strand, 7624231 - 7623691
Alignment:
| Q |
24 |
acattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaaca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7624231 |
acattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaaca |
7624132 |
T |
|
| Q |
124 |
tgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7624131 |
tgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttaatgcacctcaaattaggttttgtggacgttatcgt |
7624032 |
T |
|
| Q |
224 |
ggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataac |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7624031 |
ggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataac |
7623932 |
T |
|
| Q |
324 |
tatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattca |
423 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623931 |
tatcaagatcttgtgtttgccccttatggtccgaggtggcgaatgctccgaaaaatctcctccgttcatctcttctccaacaaagtcatggaagaattca |
7623832 |
T |
|
| Q |
424 |
aacacttgcgtcaggttagttagttaattaatatcattttctcaatttcaacataagttgcactatcaatgtcatttatacgagagtcacatcattttgt |
523 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623831 |
aacacttgcgtcaggtta----gttaattaatatcattttctcaatttcaacataagttgcactatcaatgtcatttatacgagagtcacatcattttgt |
7623736 |
T |
|
| Q |
524 |
aacctgaaaattaatactcattcgaattttatataagagaataaa |
568 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
7623735 |
aacctgaaaattaatactcatttgaattttatctaagagaataaa |
7623691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 24 - 478
Target Start/End: Original strand, 7659454 - 7659908
Alignment:
| Q |
24 |
acattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaaca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7659454 |
acattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaaca |
7659553 |
T |
|
| Q |
124 |
tgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7659554 |
tgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaattcatggccctttgatgcacctcaaattaggttttgtggacgttatcgt |
7659653 |
T |
|
| Q |
224 |
ggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataac |
323 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7659654 |
ggcggcttctggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataac |
7659753 |
T |
|
| Q |
324 |
tatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattca |
423 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7659754 |
tatcaagaccttgtgtttgcaccttatggtccgcggtggcgaatgctccgaaaaatctcctcagttcatctcttctcaaacaaagtcatggaagaattca |
7659853 |
T |
|
| Q |
424 |
aacacttgcgtcaggttagttagttaattaatatcattttctcaatttcaacata |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7659854 |
aacacttgcgtcaggttagttagttaattaatatcattttctcaatttcaacata |
7659908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 39 - 445
Target Start/End: Original strand, 7675096 - 7675502
Alignment:
| Q |
39 |
atataccgttttatgaaatttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtc |
138 |
Q |
| |
|
||||||||||| |||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||| | || | |
|
|
| T |
7675096 |
atataccgtttggtgaagtttgcaacaagaacttcatcactaccactcccacctggaccaaaaccatggccaataataggtaacttaccacaccttggcc |
7675195 |
T |
|
| Q |
139 |
ctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggctc |
238 |
Q |
| |
|
|||| |||||||| ||| ||||| ||||||| ||| | |||||||||||||||||||||||||||| | ||||| || |||||||||||||| | ||| |
|
|
| T |
7675196 |
ctgcaccacaccaatctcttgcaaccttggctgaaacctatggccctttgatgcacctcaaattaggctcggtggatgtgatcgtggcggcttcggcctc |
7675295 |
T |
|
| Q |
239 |
cgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgtg |
338 |
Q |
| |
|
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |||| |||||| |||||||| |||||| |
|
|
| T |
7675296 |
cgtggcggaacaattcttaaaggtacatgatgctaactttagtagccggccacccaatgccggagctaagtacataggttataattatcaagaccttgtg |
7675395 |
T |
|
| Q |
339 |
tttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcagg |
438 |
Q |
| |
|
|||| |||||||||||| |||||||| | ||| |||||||| | | ||||| |||||||||||| || | |||| ||||| |||||| | ||||||| |
|
|
| T |
7675396 |
tttggtccttatggtccaaggtggcgactactcagaaaaatcactactgttcacctcttctccaaccaatccttggatgaatttaaacacctacgtcagg |
7675495 |
T |
|
| Q |
439 |
ttagtta |
445 |
Q |
| |
|
||||||| |
|
|
| T |
7675496 |
ttagtta |
7675502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 566 - 705
Target Start/End: Complemental strand, 7623530 - 7623391
Alignment:
| Q |
566 |
aaaaatcttcccagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
665 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623530 |
aaaaatcttccgagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
7623431 |
T |
|
| Q |
666 |
agtcatgaacaagttttggttatattgacttgagtataat |
705 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7623430 |
agtcatgaacaagttttgcttatattgacttgagtataat |
7623391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 45477623 - 45477762
Alignment:
| Q |
225 |
gcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataact |
324 |
Q |
| |
|
|||||||| | ||| || || |||||||||||||| ||||||||| | || ||| |||||||||| | ||| |||| || ||||| |||| ||||| | |
|
|
| T |
45477623 |
gcggcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataatt |
45477722 |
T |
|
| Q |
325 |
atcaagatcttgtgtttgcaccttatggtccacggtggcg |
364 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
45477723 |
atcaagatcttgtttttgctccttatggaccacggtggcg |
45477762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University