View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16542_low_2 (Length: 632)
Name: NF16542_low_2
Description: NF16542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16542_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 24 - 615
Target Start/End: Original strand, 36439032 - 36439623
Alignment:
| Q |
24 |
tttcaagcaaaaaaggagagtacctacccaattcatgcttatccacacgtacatacaaatcttgtccaacttgtgtgtaagtcctagtatcctccaaatc |
123 |
Q |
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| T |
36439032 |
tttcaagcaaaaaaggagagtacctacccaattcatgcttatccacacgtacatacaaatcttgtccaacttgtgtgtaagtcctagtatcctccaaatc |
36439131 |
T |
|
| Q |
124 |
accatgccaagtaacacacccactttgcaacatctcattttcacttgtaaatgcaacacaagagcaatcccctaaacacatctctctacactccttcaat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36439132 |
accatgccaagtaacacacccactttgcaacatctcattttcacttgtaaatgcaacacaagagcaatcccctaaacacatctctctacactccttcaat |
36439231 |
T |
|
| Q |
224 |
cccaaactctcgttcacacgtgtcattgaagtatttggcaccttcacacgtaccactttcacaaacccttccccatttcgacacgtggacacattcgact |
323 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36439232 |
cccaaactctcattcacacgtgtcattgaagtattcggcaccttcacacgtgccactttcacaaacccttccccatttcgacacgtggacacattcgact |
36439331 |
T |
|
| Q |
324 |
tcctcacacacccacccgacccatctctcaaataccattccctctcaaactttggttcaaatccaggtaaacactcacactcaaatttttccgcattata |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36439332 |
tcctcacacacccacccgacccatctctcaaataccattccctctcaaactttggttcaaatccaggtaaacactcacactcaaatttttccgcattata |
36439431 |
T |
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| Q |
424 |
cgggtcacaattcgagttcaacccacattgcttgaaattatcacattcctctttcggaccaaaccatatttgaaaccatctgttttcgtttggttgccac |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36439432 |
cgggtcacaattcgagttcaacccacattgcttgaaattatcacattcctctttcggaccaaaccatatttgaaaccatctgttttcgtttggttgccac |
36439531 |
T |
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| Q |
524 |
gtcagcctcctcacgtgacccgagtcttctaaaaccattcttgatatcacccttggatctttcacaccatactctataaaaccttcatctac |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36439532 |
gtcagcctcctcacgtgacccgagtcttctaaaaccattcttgatatcacccttggatctttcacaccatactctataaaaacttcatctac |
36439623 |
T |
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